Entry Detail



General Information

Database ID:SKCM08665
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:SOX5
Full Name:SRY-box 5
Category:mRNA
Synonyms:L-SOX5|L-SOX5B|L-SOX5F|LAMSHF
Chromosome:chr12
Strand:-
Coordinate:
Start Site(bp):23529500End Site(bp):23951032
Gene Summary:This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. The encoded protein may play a role in chondrogenesis. A pseudogene of this gene is located on chromosome 8. Multiple transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
External Links:
Ensembl ID:ENSG00000134532
HGNC ID:HGNC:11201
Entrez Gene:6660



Expression Profile of SOX5 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-miR-1271-5p
YES
YES
YES
hsa-miR-130a-3p
YES
YES
YES
hsa-miR-130b-3p
YES
YES
YES
hsa-miR-132-3p
YES
YES
YES
hsa-miR-1-3p
YES
YES
YES
hsa-miR-142-3p
YES
YES
YES
hsa-miR-142-5p
YES
NO
YES
hsa-miR-15a-5p
YES
NO
YES
hsa-miR-15b-5p
YES
NO
YES
hsa-miR-16-5p
YES
NO
YES
hsa-miR-181a-5p
YES
YES
YES
hsa-miR-181b-5p
YES
YES
YES
hsa-miR-181c-5p
YES
YES
YES
hsa-miR-181d-5p
YES
YES
YES
hsa-miR-182-5p
YES
NO
YES
hsa-miR-193a-3p
YES
YES
YES
hsa-miR-193b-3p
YES
YES
YES
hsa-miR-194-5p
YES
YES
YES
hsa-miR-195-5p
YES
NO
YES
hsa-miR-19a-3p
YES
NO
YES
hsa-miR-19b-3p
YES
NO
YES
hsa-miR-206
YES
YES
YES
hsa-miR-208a-3p
NO
YES
YES
hsa-miR-208b-3p
NO
YES
YES
hsa-miR-212-3p
YES
YES
YES
hsa-miR-21-5p
YES
YES
YES
hsa-miR-216a-5p
YES
NO
YES
hsa-miR-216b-5p
YES
YES
YES
hsa-miR-218-5p
YES
YES
YES
hsa-miR-219a-5p
YES
YES
NO
hsa-miR-223-3p
YES
YES
NO
hsa-miR-23a-3p
YES
YES
NO
hsa-miR-23b-3p
YES
YES
NO
hsa-miR-299-3p
YES
YES
NO
hsa-miR-301a-3p
YES
YES
YES
hsa-miR-301b-3p
YES
YES
YES
hsa-miR-329-3p
YES
YES
NO
hsa-miR-33b-5p
YES
YES
NO
hsa-miR-362-3p
YES
YES
NO
hsa-miR-382-5p
YES
YES
NO
hsa-miR-383-5p
YES
YES
NO
hsa-miR-410-3p
YES
YES
NO
hsa-miR-424-5p
YES
NO
YES
hsa-miR-454-3p
YES
YES
YES
hsa-miR-495-3p
YES
YES
YES
hsa-miR-497-5p
YES
NO
YES
hsa-miR-499a-5p
NO
YES
YES
hsa-miR-505-3p
YES
YES
NO
hsa-miR-543
YES
YES
NO
hsa-miR-590-5p
YES
YES
YES
hsa-miR-613
YES
YES
YES
hsa-miR-653-5p
YES
YES
NO
hsa-miR-876-5p
YES
YES
NO
hsa-miR-96-5p
YES
YES
YES
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