ctcRbase

Entry Detail

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General Information

Database ID: SKCM08665 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: SOX5 Full Name: SRY-box 5 Category: mRNA Synonyms: L-SOX5|L-SOX5B|L-SOX5F|LAMSHF Chromosome: chr12 Strand: - Coordinate: Start Site(bp): 23529500 End Site(bp): 23951032 Gene Summary: This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. The encoded protein may play a role in chondrogenesis. A pseudogene of this gene is located on chromosome 8. Multiple transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000134532 HGNC ID: HGNC:11201 Entrez Gene: 6660

Expression Profile of SOX5 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-1271-5p YES YES YES hsa-miR-130a-3p YES YES YES hsa-miR-130b-3p YES YES YES hsa-miR-132-3p YES YES YES hsa-miR-1-3p YES YES YES hsa-miR-142-3p YES YES YES hsa-miR-142-5p YES NO YES hsa-miR-15a-5p YES NO YES hsa-miR-15b-5p YES NO YES hsa-miR-16-5p YES NO YES hsa-miR-181a-5p YES YES YES hsa-miR-181b-5p YES YES YES hsa-miR-181c-5p YES YES YES hsa-miR-181d-5p YES YES YES hsa-miR-182-5p YES NO YES hsa-miR-193a-3p YES YES YES hsa-miR-193b-3p YES YES YES hsa-miR-194-5p YES YES YES hsa-miR-195-5p YES NO YES hsa-miR-19a-3p YES NO YES hsa-miR-19b-3p YES NO YES hsa-miR-206 YES YES YES hsa-miR-208a-3p NO YES YES hsa-miR-208b-3p NO YES YES hsa-miR-212-3p YES YES YES hsa-miR-21-5p YES YES YES hsa-miR-216a-5p YES NO YES hsa-miR-216b-5p YES YES YES hsa-miR-218-5p YES YES YES hsa-miR-219a-5p YES YES NO hsa-miR-223-3p YES YES NO hsa-miR-23a-3p YES YES NO hsa-miR-23b-3p YES YES NO hsa-miR-299-3p YES YES NO hsa-miR-301a-3p YES YES YES hsa-miR-301b-3p YES YES YES hsa-miR-329-3p YES YES NO hsa-miR-33b-5p YES YES NO hsa-miR-362-3p YES YES NO hsa-miR-382-5p YES YES NO hsa-miR-383-5p YES YES NO hsa-miR-410-3p YES YES NO hsa-miR-424-5p YES NO YES hsa-miR-454-3p YES YES YES hsa-miR-495-3p YES YES YES hsa-miR-497-5p YES NO YES hsa-miR-499a-5p NO YES YES hsa-miR-505-3p YES YES NO hsa-miR-543 YES YES NO hsa-miR-590-5p YES YES YES hsa-miR-613 YES YES YES hsa-miR-653-5p YES YES NO hsa-miR-876-5p YES YES NO hsa-miR-96-5p YES YES YES Display: