ctcRbase

Entry Detail

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General Information

Database ID: SKCM08764 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: GPATCH2 Full Name: G-patch domain containing 2 Category: mRNA Synonyms: CT110|GPATC2|PPP1R30|Pfa1 Chromosome: chr1 Strand: - Coordinate: Start Site(bp): 217426992 End Site(bp): 217631082 Gene Summary: The gene encodes a nuclear factor that may play a role in spermatogenesis and in tumor growth during breast cancer. The encoded protein contains a G-patch domain with an RNA binding motif. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2017] External Links: Ensembl ID: ENSG00000092978 HGNC ID: HGNC:25499 Entrez Gene: 55105

Expression Profile of GPATCH2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-101-3p NO YES YES hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-125a-5p NO YES YES hsa-miR-125b-5p NO YES YES hsa-miR-1271-5p NO YES YES hsa-miR-128-3p NO YES YES hsa-miR-129-5p YES YES NO hsa-miR-130a-3p YES YES NO hsa-miR-130b-3p YES YES NO hsa-miR-17-5p YES YES NO hsa-miR-182-5p NO YES YES hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-29a-3p YES YES YES hsa-miR-29b-3p YES YES YES hsa-miR-29c-3p YES YES YES hsa-miR-301a-3p YES YES NO hsa-miR-301b-3p YES YES NO hsa-miR-433-3p NO YES YES hsa-miR-454-3p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-505-3p YES YES NO hsa-miR-519d-3p YES YES NO hsa-miR-875-5p YES YES NO hsa-miR-93-5p YES YES NO hsa-miR-96-5p NO YES YES Display: