ctcRbase

Entry Detail

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General Information

Database ID: SKCM08856 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: UBAP1 Full Name: ubiquitin associated protein 1 Category: mRNA Synonyms: NAG20|UAP|UBAP|UBAP-1 Chromosome: chr9 Strand: + Coordinate: Start Site(bp): 34179005 End Site(bp): 34252523 Gene Summary: This gene is a member of the UBA domain family, whose members include proteins having connections to ubiquitin and the ubiquitination pathway. The ubiquitin associated domain is thought to be a non-covalent ubiquitin binding domain consisting of a compact three helix bundle. This particular protein originates from a gene locus in a refined region on chromosome 9 undergoing loss of heterozygosity in nasopharyngeal carcinoma (NPC). Taking into account its cytogenetic location, this UBA domain family member is being studies as a putative target for mutation in nasopharyngeal carcinomas. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2010] External Links: Ensembl ID: ENSG00000165006 HGNC ID: HGNC:12461 Entrez Gene: 51271

Expression Profile of UBAP1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-106a-5p YES YES NO hsa-miR-106b-5p YES YES NO hsa-miR-10a-5p YES YES NO hsa-miR-10b-5p YES YES NO hsa-miR-1197 YES NO YES hsa-miR-134-5p YES YES NO hsa-miR-15a-5p YES NO YES hsa-miR-15b-5p YES NO YES hsa-miR-16-5p YES NO YES hsa-miR-17-5p YES YES NO hsa-miR-195-5p YES NO YES hsa-miR-199a-5p YES YES YES hsa-miR-199b-5p YES YES YES hsa-miR-20a-5p YES YES NO hsa-miR-20b-5p YES YES NO hsa-miR-302b-3p YES YES NO hsa-miR-302c-3p YES YES NO hsa-miR-302e YES YES NO hsa-miR-326 YES YES NO hsa-miR-330-5p YES YES NO hsa-miR-369-3p YES NO YES hsa-miR-384 YES YES YES hsa-miR-424-5p YES NO YES hsa-miR-495-3p YES YES YES hsa-miR-497-5p YES NO YES hsa-miR-519d-3p YES YES NO hsa-miR-599 YES YES NO hsa-miR-655-3p YES NO YES hsa-miR-93-5p YES YES NO Display: