ctcRbase

Entry Detail

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General Information

Database ID: SKCM08969 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: PDZRN3 Full Name: PDZ domain containing ring finger 3 Category: mRNA Synonyms: LNX3|SEMACAP3|SEMCAP3 Chromosome: chr3 Strand: - Coordinate: Start Site(bp): 73382433 End Site(bp): 73624940 Gene Summary: This gene encodes a member of the LNX (Ligand of Numb Protein-X) family of RING-type ubiquitin E3 ligases. This protein may function in vascular morphogenesis and the differentiation of adipocytes, osteoblasts and myoblasts. This protein may be targeted for degradation by the human papilloma virus E6 protein. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014] External Links: Ensembl ID: ENSG00000121440 HGNC ID: HGNC:17704 Entrez Gene: 23024

Expression Profile of PDZRN3 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-193a-3p YES YES NO hsa-miR-193b-3p YES YES NO hsa-miR-300 YES YES NO hsa-miR-34a-5p YES YES NO hsa-miR-34c-5p YES YES NO hsa-miR-381-3p YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-449a YES YES NO hsa-miR-449b-5p YES YES NO hsa-miR-486-5p YES YES NO hsa-miR-599 YES YES NO hsa-miR-758-3p YES YES NO hsa-miR-873-5p YES YES NO Display: