ctcRbase

Entry Detail

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General Information

Database ID: SKCM09034 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: HCFC2 Full Name: host cell factor C2 Category: mRNA Synonyms: HCF-2|HCF2 Chromosome: chr12 Strand: + Coordinate: Start Site(bp): 104064457 End Site(bp): 104106524 Gene Summary: This gene encodes one of two proteins which interact with VP16, a herpes simplex virus protein that initiates virus infection. Both the encoded protein and the original Herpes host cell factor interact with VP16 through a beta-propeller domain. The original Herpes host cell factor, however, is effective at initiating viral infection while the encoded protein is not. Transcripts of varying length due to alternative polyadenylation signals have been described. [provided by RefSeq, Jul 2008] External Links: Ensembl ID: ENSG00000111727 HGNC ID: HGNC:24972 Entrez Gene: 29915

Expression Profile of HCFC2 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-let-7a-5p NO YES YES hsa-let-7b-5p NO YES YES hsa-let-7c-5p NO YES YES hsa-let-7d-5p NO YES YES hsa-let-7e-5p NO YES YES hsa-let-7f-5p NO YES YES hsa-let-7g-5p NO YES YES hsa-let-7i-5p NO YES YES hsa-miR-130a-3p NO YES YES hsa-miR-130b-3p NO YES YES hsa-miR-153-3p NO YES YES hsa-miR-155-5p NO YES YES hsa-miR-18a-5p NO YES YES hsa-miR-18b-5p NO YES YES hsa-miR-19a-3p NO YES YES hsa-miR-19b-3p NO YES YES hsa-miR-200b-3p NO YES YES hsa-miR-200c-3p NO YES YES hsa-miR-300 NO YES YES hsa-miR-301a-3p NO YES YES hsa-miR-301b-3p NO YES YES hsa-miR-302a-3p NO YES YES hsa-miR-302b-3p NO YES YES hsa-miR-302c-3p NO YES YES hsa-miR-302d-3p NO YES YES hsa-miR-302e NO YES YES hsa-miR-30a-5p NO YES YES hsa-miR-30b-5p NO YES YES hsa-miR-30c-5p NO YES YES hsa-miR-30d-5p NO YES YES hsa-miR-30e-5p NO YES YES hsa-miR-335-5p NO YES YES hsa-miR-361-5p NO YES YES hsa-miR-372-3p NO YES YES hsa-miR-373-3p NO YES YES hsa-miR-381-3p NO YES YES hsa-miR-429 NO YES YES hsa-miR-448 NO YES YES hsa-miR-454-3p NO YES YES hsa-miR-455-5p NO YES YES hsa-miR-494-3p NO YES YES hsa-miR-495-3p NO YES YES hsa-miR-520a-3p NO YES YES hsa-miR-520b NO YES YES hsa-miR-520c-3p NO YES YES hsa-miR-520d-3p NO YES YES hsa-miR-520e NO YES YES hsa-miR-9-5p NO YES YES hsa-miR-98-5p NO YES YES Display: