Entry Detail



General Information

Database ID:SKCM09057
Cancer Type:melanoma
Dataset:GSE38495
CTCs/CTM Isolation Method:immunomagnetic purification



Gene Information

ncRNA Symbol:HOXA1
Full Name:homeobox A1
Category:mRNA
Synonyms:BSAS|HOX1|HOX1F
Chromosome:chr7
Strand:-
Coordinate:
Start Site(bp):27092993End Site(bp):27095996
Gene Summary:In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. The encoded protein may be involved in the placement of hindbrain segments in the proper location along the anterior-posterior axis during development. Two transcript variants encoding two different isoforms have been found for this gene, with only one of the isoforms containing the homeodomain region. [provided by RefSeq, Jul 2008]
External Links:
Ensembl ID:ENSG00000105991
HGNC ID:HGNC:5099
Entrez Gene:3198



Expression Profile of HOXA1 Gene

 







Regulatory Relationship

mRNA targets:NA
miRNA targets:
miRNA NamePITAmiRandaRNAhybrid
hsa-let-7a-5p
YES
YES
YES
hsa-let-7b-5p
YES
YES
YES
hsa-let-7c-5p
YES
YES
YES
hsa-let-7d-5p
YES
YES
YES
hsa-let-7e-5p
YES
YES
YES
hsa-let-7f-5p
YES
YES
YES
hsa-let-7g-5p
YES
YES
YES
hsa-let-7i-5p
YES
YES
YES
hsa-miR-100-5p
YES
YES
YES
hsa-miR-10a-5p
YES
YES
YES
hsa-miR-10b-5p
YES
YES
YES
hsa-miR-181a-5p
YES
YES
YES
hsa-miR-181b-5p
YES
YES
YES
hsa-miR-181c-5p
YES
YES
YES
hsa-miR-181d-5p
YES
YES
YES
hsa-miR-196a-5p
YES
YES
NO
hsa-miR-196b-5p
YES
YES
NO
hsa-miR-218-5p
YES
YES
YES
hsa-miR-219a-5p
YES
NO
YES
hsa-miR-23a-3p
YES
YES
YES
hsa-miR-23b-3p
YES
YES
YES
hsa-miR-24-3p
YES
YES
NO
hsa-miR-30a-5p
YES
YES
YES
hsa-miR-30b-5p
YES
YES
YES
hsa-miR-30c-5p
YES
YES
YES
hsa-miR-30d-5p
YES
YES
YES
hsa-miR-30e-5p
YES
YES
YES
hsa-miR-378a-3p
YES
YES
NO
hsa-miR-422a
YES
YES
NO
hsa-miR-429
YES
YES
NO
hsa-miR-433-3p
YES
YES
YES
hsa-miR-496
YES
YES
NO
hsa-miR-599
YES
YES
NO
hsa-miR-98-5p
YES
YES
YES
hsa-miR-99a-5p
YES
YES
YES
hsa-miR-99b-5p
YES
YES
YES
Display: