ctcRbase

Entry Detail

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General Information

Database ID: SKCM09067 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RBPMS Full Name: RNA binding protein, mRNA processing factor Category: mRNA Synonyms: HERMES Chromosome: chr8 Strand: + Coordinate: Start Site(bp): 30384479 End Site(bp): 30572261 Gene Summary: This gene encodes a member of the RNA recognition motif family of RNA-binding proteins. The RNA recognition motif is between 80-100 amino acids in length and family members contain one to four copies of the motif. The RNA recognition motif consists of two short stretches of conserved sequence, as well as a few highly conserved hydrophobic residues. The encoded protein has a single, putative RNA recognition motif in its N-terminus. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jun 2013] External Links: Ensembl ID: ENSG00000157110 HGNC ID: HGNC:19097 Entrez Gene: 11030

Expression Profile of RBPMS Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-125a-5p YES YES YES hsa-miR-125b-5p YES YES YES hsa-miR-129-5p YES YES NO hsa-miR-135a-5p YES YES NO hsa-miR-135b-5p YES YES NO hsa-miR-141-3p YES YES NO hsa-miR-199a-5p YES YES YES hsa-miR-199b-5p YES YES YES hsa-miR-200a-3p YES YES NO hsa-miR-200b-3p YES YES NO hsa-miR-200c-3p YES YES NO hsa-miR-216a-5p YES YES YES hsa-miR-216b-5p YES YES YES hsa-miR-219a-5p YES YES YES hsa-miR-338-3p YES YES NO hsa-miR-340-5p YES NO YES hsa-miR-371a-5p YES YES YES hsa-miR-429 YES YES NO hsa-miR-431-5p YES YES YES hsa-miR-485-5p YES YES YES hsa-miR-488-3p YES YES NO hsa-miR-494-3p YES YES NO hsa-miR-495-3p YES YES NO hsa-miR-543 YES YES NO hsa-miR-625-5p YES NO NO hsa-miR-653-5p YES YES NO hsa-miR-758-3p YES YES NO Display: