ctcRbase

Entry Detail

General Information

Database ID:	SKCM09127
Cancer Type:	melanoma
Dataset:	GSE38495
CTCs/CTM Isolation Method:	immunomagnetic purification

Gene Information

ncRNA Symbol:

FOXC1

Full Name:

forkhead box C1

Category:

mRNA

Synonyms:

Chromosome:

chr6

Strand:

Coordinate:

Start Site(bp):

1609972

End Site(bp):

1613897

Gene Summary:

This gene belongs to the forkhead family of transcription factors which is characterized by a distinct DNA-binding forkhead domain. The specific function of this gene has not yet been determined; however, it has been shown to play a role in the regulation of embryonic and ocular development. Mutations in this gene cause various glaucoma phenotypes including primary congenital glaucoma, autosomal dominant iridogoniodysgenesis anomaly, and Axenfeld-Rieger anomaly. [provided by RefSeq, Jul 2008]

External Links:

Ensembl ID:	ENSG00000054598
HGNC ID:	HGNC:3800
Entrez Gene:	2296

Expression Profile of FOXC1 Gene

Regulatory Relationship

mRNA targets:

miRNA targets:

miRNA Name	PITA	miRanda	RNAhybrid
hsa-miR-103a-3p	YES	YES	NO
hsa-miR-106a-5p	YES	YES	NO
hsa-miR-106b-5p	YES	YES	NO
hsa-miR-107	YES	YES	NO
hsa-miR-133a-3p	YES	YES	YES
hsa-miR-133b	YES	YES	YES
hsa-miR-136-5p	YES	YES	NO
hsa-miR-137	YES	YES	NO
hsa-miR-138-5p	YES	YES	YES
hsa-miR-141-3p	YES	YES	YES
hsa-miR-149-5p	YES	YES	NO
hsa-miR-17-5p	YES	YES	NO
hsa-miR-186-5p	YES	YES	NO
hsa-miR-200a-3p	YES	YES	YES
hsa-miR-204-5p	YES	YES	NO
hsa-miR-20a-5p	YES	YES	NO
hsa-miR-20b-5p	YES	YES	NO
hsa-miR-211-5p	YES	YES	NO
hsa-miR-219a-5p	YES	YES	NO
hsa-miR-31-5p	YES	YES	NO
hsa-miR-320a	YES	YES	NO
hsa-miR-320b	YES	YES	NO
hsa-miR-320c	YES	YES	NO
hsa-miR-320d	YES	YES	NO
hsa-miR-371a-5p	YES	YES	NO
hsa-miR-374a-5p	YES	YES	NO
hsa-miR-374b-5p	YES	YES	NO
hsa-miR-375	YES	YES	NO
hsa-miR-421	YES	YES	NO
hsa-miR-448	YES	YES	NO
hsa-miR-495-3p	YES	YES	NO
hsa-miR-519d-3p	YES	YES	NO
hsa-miR-582-5p	YES	NO	YES
hsa-miR-625-5p	YES	NO	NO
hsa-miR-655-3p	YES	NO	YES
hsa-miR-876-5p	YES	YES	NO
hsa-miR-93-5p	YES	YES	NO

Display: