ctcRbase

Entry Detail

---



General Information

Database ID: SKCM09192 Cancer Type: melanoma Dataset: GSE38495 CTCs/CTM Isolation Method: immunomagnetic purification

Gene Information

ncRNA Symbol: RETREG1 Full Name: reticulophagy regulator 1 Category: mRNA Synonyms: FAM134B|JK-1|JK1 Chromosome: chr5 Strand: - Coordinate: Start Site(bp): 16473038 End Site(bp): 16617058 Gene Summary: The protein encoded by this gene is a cis-Golgi transmembrane protein that may be necessary for the long-term survival of nociceptive and autonomic ganglion neurons. Mutations in this gene are a cause of hereditary sensory and autonomic neuropathy type IIB (HSAN IIB), and this gene may also play a role in susceptibility to vascular dementia. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Nov 2011] External Links: Ensembl ID: ENSG00000154153 HGNC ID: HGNC:25964 Entrez Gene: 54463

Expression Profile of RETREG1 Gene

 

Regulatory Relationship

mRNA targets: NA miRNA targets: miRNA Name PITA miRanda RNAhybrid hsa-miR-124-3p YES YES YES hsa-miR-1271-5p YES YES YES hsa-miR-128-3p YES YES NO hsa-miR-137 YES YES NO hsa-miR-142-5p YES NO YES hsa-miR-182-5p YES YES YES hsa-miR-186-5p YES YES NO hsa-miR-192-5p YES YES NO hsa-miR-194-5p YES YES NO hsa-miR-204-5p YES YES NO hsa-miR-211-5p YES YES NO hsa-miR-215-5p YES YES NO hsa-miR-221-3p YES YES NO hsa-miR-222-3p YES YES NO hsa-miR-31-5p YES YES YES hsa-miR-340-5p YES YES NO hsa-miR-425-5p YES YES NO hsa-miR-433-3p YES YES NO hsa-miR-506-3p YES YES NO hsa-miR-875-5p YES YES YES hsa-miR-96-5p YES NO YES Display: