GEO series Title Authors Pubmed ID Species Cancer type Cancer SubType Cell line GEO platform Number of samples GSE2399 MicroRNA expression in lymphoma lines He L, Thomson JM, Hemann MT, Hernando-Monge E et al. 15944707 Homo sapiens lymphoma, leukemia GPL1899 40 GSE2564 MicroRNA expression profiles classify human cancers Lu J, Getz G, Miska EA 15944708 Homo sapiens breast cancer, renal carcinoma, lung cancer, prostate cancer, uterus carcinoma GPL1986 334 GSE4589 Breast tumor miRNA profiling Mattie MD, Haqq CM, Benz CC, Scott GK, Fedele V 16784538 Homo sapiens breast cancer GPL3238 20 GSE5244 Human Uterine Leiomyomata microRNA gene expression Wang T, Zhang X, Obijuru L, Aris V, Lee P, Mittal K, Soteropoulos P, Wei J 17243163 Homo sapiens uterus cancer GPL3879 51 GSE6188 Distinctive microRNA profiles relating to patient survival in esophageal squamous cell carcinoma Guo Y 18172293 Homo sapiens esophageal cancer GPL4508 257 GSE6636 Prostate miRNA expression profiles Mattie MD, Haqq CM, Simko J, Dai C, Carroll P, Chew K Homo sapiens prostate cancer GPL3238 47 GSE7072 Profiling miRNAs in human retinoblastoma Huang JC, Babak T, Hughes TR, Corson TW, Frey B, Morris Q, Chua G, Blencowe BJ 18026111 Homo sapiens retinoblastoma GPL4879 6 GSE7842 MicroRNA expression profiling of human breast cancer identifies new markers of tumour subtype Blenkiron C, Goldstein LD, Thorne NP, Spiteri MI, Chin S, Dunning M, Barbosa-Morais NL, Teschendorff AE, Green AR, Ellis IO, Tavaré S, Caldas C, Miska EA 17922911 Homo sapiens breast cancer ER postive/negative GPL5173 119 GSE8126 Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer Ambs S, Hudson R, Yi M 18676839 Homo sapiens prostate cancer GPL5180 76 GSE10259 Characterization of microRNA expression in colorectal cancer Arndt GM, Dossey L, Cullen LM, Lai 19843336 Homo sapiens colorectal cancer GPL4411 66 GSE10694 MicroRNAs expression profile in human hepatocellular carcinoma Li W, Gu J 18649363 Homo sapiens hepatocellular carcinoma GPL6542 166 GSE11016 miRNA profiling of adult and pediatric renal tumors Kort EJ 18519660 Homo sapiens kidney cancer Wilms tumur GPL6668 32 GSE11163 miRNA expression in head and neck squamous cell carcinoma (HNSCC) Avissar M, Christensen BC, Kelsey KT, Marsit CJ 19351747 Homo sapiens head and neck cancer GPL6690 27 GSE12105 Array-based miRNA Profiling of Clear Cell Renal Cell Cancer Hans-Joachim M, Klaus J, Monika J, Glenn K 19228262 Homo sapiens kidney cancer clear cell renal cell carcinoma GPL6955 24 GSE12303 microRNA expression profiling in human medulloblastoma Ferretti E, De Smaele E, Po A, Gulino A 18973228 Homo sapiens brain cancer medulloblastoma GPL7114 48 GSE12933 miRNA profiles of diffuse large B cell lymphoma (DLBCL) derived cell lines Malumbres R, Lossos IS 19047678 Homo sapiens lymphomas GPL7373 8 GSE13030 Human primary and secondary glioblastoma vs. non-neoplastic adult brain tissue D'Urso OF, D'Urso PI, Ciappetta P Homo sapiens brain cancer glioblastoma GPL7389 93 GSE14857 MicroRNA Profiling Identifies Potential Diagnostic and Prognostic Markers in Prostate Cancer Mollenkopf H, Jung K, Jung M, Schäfer A, Stephan C, Lein M, Kristiansen G 19676045 Homo sapiens prostate cancer GPL6955 24 GSE15008 MicroRNA Expression Profile Reveals Important Clinical Tools for the Pathology of Lung Cancer Tan X, Qin W, Zhang L, Hang J Homo sapiens lung cancer GPL8176 375 GSE16025 miRNA prognostic profiles in lung cancer miRNA prognostic profiles in lung cancer 19584273 Homo sapiens lung cancer GPL5106 71 GSE16456 MicroRNA expression signatures in Barrett's esophagus and esophageal adenocarcinoma Yang H, Gu J, Wang K, Zhang W, Xing J, Chen Z, Ajani J, Wu X 19737949 Homo sapiens esophageal cancer GPL6955 32 GSE16558 MicroRNAs in Myeloma Gutierrez NC, Sarasquete ME, Delgado M, Ticona FV, De las Rivas J, Homo sapiens lymphoma multiple myeloma GPL8695 65 GSE17792 microRNA profiles of meningiomas Saydam O 19703993 Homo sapiens brain cancer meningioma GPL7436 17 GSE20099 microRNA/UCR expression profiling of human Barrett's carcinogenesis Fassan M, Volinia S, Palatini J, Croce CM, Baffa R, Pizzi M, Ancona E, Rugge M, Galasso M, Zaninotto G 21128279 Homo sapiens esophageal cancer Barrett's carcinogenesis GPL8871 51 GSE6857 Unique MicroRNA Expression Signature Predicts Survival, Metastases and Recurrence of HCC 18176954 Homo sapiens hepatocellular carcinoma GPL4700 482 GSE7055 Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer Ambs S, Hudson RS, Prueitt R, Yi M 18459106 Homo sapiens prostate cancer GPL4700 114 GSE7828 MicroRNA profiles of 84 colon adenocarcinomas and paired nontumorous Schetter AJ, Leung SY, Sohn JJ, Zanetti KA et al 18230780 Homo sapiens colon cancer GPL4700 170 GSE15885 MicroRNA signatures predict Estrogen receptor, Progesterone receptor and HER2/neu receptor status in Breast Cancer Lowery AJ, Miller N, Devaney A, McNeill RE, Davoren PA, Lemetre C, Benes V, Schmidt S, Blake J, Ball GR, Kerin MJ 19432961 Homo sapiens breast cancer GPL6127 29 GSE17498 Identification of MicroRNA Expression Patterns and a MicroRNAs/mRNA Regulatory Network in Multiple Myeloma Lionetti M, Biasiolo M, Agnelli L, Todoerti K, Mosca L, Fabris S, Sales G, Lambertenghi-Deliliers G, Bicciato S, Lombardi L, Bortoluzzi S, Neri A 19846888 Homo sapiens lymphoma multiple myeloma GPL8227 102 GSE18509 miR-193b represses cell proliferation and regulates cyclin D1 in melanoma: benign nevi and metastatic melanoma Chen J, Feilotter H, Zhang X, Tron VA 20304954 Homo sapiens melanoma GPL9081 16 GSE18392 Genome-wide analysis of miRNA levels in colon cancer Sarver A 19922656 Homo sapiens colon cancer GPL8178 145 GSE19856 Study of miRNA expression in childhood adrenocortical tumors LALLI E 20484036 Homo sapiens adrenocortical tumor GPL8227 30 GSE19387 MicroRNA Expression Profiles Associated with Mutational Status and Survival in Malignant Melanoma Caramuta S, Egyhazi S 20357817 Homo sapiens melanoma GPL9081 40 GSE22058 miR-122 as a Regulator of Mitochondrial Metabolic Gene Network in Hepatocellular Carcinoma Burchard J, Zhang C, Liu AM, Lee NP, Wong K, Poon RT, Sham PC, Lam BY, Ferguson MD, Tokiwa G, Smith R, Leeson B, Beard R, Lamb JR, Lim L, Mao M, Dai H, Luk JM 20739924 Homo sapiens hepatocellular carcinoma GPL10457 397 GSE21036 MicroRNA expression data for human primary and metastatic prostate cancer samples and control normal adjacent benign prostate Taylor BS, Schultz N, Hieronymus H, Sawyers CL 20579941 Homo sapiens prostate cancer GPL8227 142 GSE23022 MicroRNA expression data from human prostate cancer Wach S, Ekici AB, Reis A, Eltze E 21400514 Homo sapiens prostate cancer GPL8786 40 GSE24390 microRNA profiles of schwannomas Saydam O 21156648 Homo sapiens brain cancer Schwannoma tumors GPL7436 24 GSE24485 miRNA expression profile of human MALT lymphoma compared to gastritis and gDLBCL Craig VJ, Mueller A 21460242 Homo sapiens lymphoma B cell lymphoma of MALT type GPL8227 22 GSE18546 Identification of Altered MicroRNA Expression Patterns in Synovial Sarcoma Hisaoka M, Matsuyama A, Nagao Y, Luan L, Kuroda T, Akiyama H, Kondo S, Hashimoto H Homo sapiens sarcoma Synovial sarcoma GPL7738 20 GSE24996 miR-193b Regulates Mcl-1 in Melanoma Chen J, Zhang X, Lentz C, Abi-Daoud M, Feilotter HE, Tron VA 21893020 Homo sapiens melanoma GPL6955 31 GSE19783 Molecular Characterization of Breast Cancer Subtypes from Joint Analysis of High Throughput miRNA and mRNA Data (II) Enerly E, Steinfeld I, Johnsen H, Kleivi KG, Leivonen SK, Russnes HG, Rønneberg JA, Navon R, Rødland E, Aure MR, Mäkelä R, Naume B, Perälä M, Kallioniemi O, Kristensen VN, Børresen-Dale A, Yakhini Z 21364938 Homo sapiens breast cancer GPL8227 216 GSE20077 Aberrantly microRNA profiling in cancerous hepatocytes versus normal primary hepatocytes He X, Chang Y, Lin J 22056881 Homo sapiens hepatocellular carcinoma GPL8227 11 GSE19980 Differentially expressed miRNAs between HepG2.2.15 and HepG2 cells Guo H, Luo M Homo sapiens hepatocellular carcinoma GPL9954 12 GSE21362 MicroRNA Profile Predicts Recurrence of Hepatocellular Carcinoma in Milan Criteria Cases with Mild Liver Cirrhosis Sato F, Hatano E, Kitamura K, Myomoto A, Fujiwara T, Takizawa S, Tsuchiya S, Tsujimoto G, Uemoto S, Shimizu K 21298008 Homo sapiens hepatocellular carcinoma GPL10312 146 GSE28700 Expression profiles of microRNAs in gastric cancer Chen C, Juan H 21703006 Homo sapiens gastric cancer GPL9081 44 GSE29352 miRNA expression profiles in Pancreatic Cystic tumours and Pancreatic Cancer Frampton A Homo sapiens pancreatic cancer GPL13606 43 GSE26245 Protein-coding and MicroRNA Biomarkers of Recurrence of Prostate Cancer Following Radical Prostatectomy Long Q, Johnson BA, Osunkoya AO, Lai Y, Zhou W, Abramovitz M, Xia M, Bouzyk MB, Nam RK, Sugar L, Stanimirovic A, Leyland-Jones BR, Seth AK, Petros JA, Moreno C Homo sapiens prostate cancer GPL11350 96 GSE22816 Deregulated miRNAs in adrenocortical tumors Caramuta S, Özata D, Velazquez-Fernandez D, Akçakaya P, Hong X, Bäckdahl M, Zedenius J, Larsson C, Lui W 21859927 Homo sapiens adrenocortical tumor GPL13347 52 GSE22216 microRNA expression profiling of early primary breast cancer to identify prognostic markers and associated pathways Buffa FM, Camps C 21737487 Homo sapiens breast cancer GPL8178 210 GSE22420 The different epidemiologic subtypes of Burkitt Lymphoma share a largely homogenous micro RNA profile distinct from diffuse large B-cell lymphoma. Lenze D 21701491 Homo sapiens lymphoma Burkitt Lymphoma GPL10554 150 GSE24508 Expression of microRNAs and their gene targets are dysregulated in pre-invasive breast cancer (microRNA) Hannafon BN, Rosenberg CL 21375733 Homo sapiens breast cancer GPL10349 19 GSE23383 miRNAs in ovarian cancer: A systems approach (miRNA data) Shahab S, Hill CG, Mittal VK, Mezencev R, Matyunina L, Walker LD, Bowen NJ, Benigno BB, Mcdonald JF 21811625 Homo sapiens ovarian cancer GPL9735 6 GSE23739 miRNA expressions in non-cancerous and cancerous human gastric tissues Oh H, Tan A, Ooi C, Deng N, Tan I, Beillard E, Lee J, Ramnarayanan K, Rha S, Palanisamy N, Voorhoeve M, Tan P 21415212 Homo sapiens gastric cancer GPL7731 80 GSE32232 microRNA-expression profile in a series of Nodal marginal zone lymphoma patients [miRNA expression] Arribas JA, Campos-Martín Y, Gómez-Abad C, Arribas JA, Algara P, Sánchez-Beato M, Rodriguez-Pinilla MS, Montes-Moreno S, Martinez N, Alves-Ferreira J, Piris MA, Mollejo M 22110251 Homo sapiens lymphoma B-cell non-Hodgkin lymphoma GPL9081 46 GSE25820 Global microRNA expression profiling of microdissected tissues from diseased and non-diseased pancreatic tissues Hahn S 21953293 Homo sapiens pancreatic cancer GPL7731 18 GSE32678 Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer [miRNA] Donahue TR, Tran LM, Hill R, Li Y, Kovochich A, Calvopina JH, Patel SG, Wu N, Hindoyan A, Farrell JJ, Li X, Dawson DW, Wu H 22261810 Homo sapiens pancreatic cancer GPL7723 32 GSE25653 miRNA profiling of Melanoma Cell lines and Normal Melanocytes Boyle GM, Woods SL, Bonazzi VF, Stark MS, Hacker E, Aoude LG, Hayward NK 21435193 Homo sapiens melanoma GPL6955 56 GSE31741 miRNA expression signatures in gastrointestinal stromal tumors (GISTs) Suzuki H, Toyota M 22258453 Homo sapiens gastrointestinal stromal tumor GPL10406 32 GSE30454 Colorectal cancers with microsatellite instability display unique miRNA profiles Balaguer F, Moreira L, Lozano JJ, Link A, Ramirez G, Shen Y, Cuatrecasas M, Arnold M, Meltzer SJ, Syngal S, Stoffel E, Jover R, Llor X, Castells A, Boland CR, Gironella M, Goel A 21844009 Homo sapiens colorectal cancer GPL8179 74 GSE31377 miRNA expression profiling of NKTCL (Natural Killer/T-Cell Lymphoma) samples Ng S, Selvarajan V, Yan J, Huang G, Lin B, Bi C, Chng W 21921041 Homo sapiens lymphoma T-Cell Lymphoma GPL8227 56 GSE33961 miRNA array in colorectal carcinoma Sun Y Homo sapiens colorectal cancer GPL7731 12 GSE26323 Human hepatocellular carcinoma: primary tumor vs.lung metastasis Wu W, Tao Z, Li W, Wan J 23478189 Homo sapiens hepatocellular carcinoma GPL11362 6 GSE35579 050209-miRNA Melanoma miRNA microarray Xu Y, Brown ER, Brenn T, Melton DW Homo sapiens melanoma GPL15183 71 GSE31629 miRNA expression profiling in Adult T-cell Leukemia (ATL) cells and in Normal CD4+ T-cells Tsutsumi A, Kagami Y, Nakano K, Yamagishi M, Uchimaru K, Utsunomiya A, Yamaguchi K, Watanabe T 22264793 Homo sapiens leukemia GPL7731 62 GSE32906 Differential expressed miRNAs in Multi-stages and Lymphoid node metastasis of Nasopharyngeal Carcinoma luo z, li z, xiang j Homo sapiens nasopharyngeal carcinoma T-cell Leukemia GPL11350 22 GSE35412 Identification and pathway analysis of microRNAs with no previous involvement in breast cancer Romero-Cordoba S, Rodriguez-Cuevas S, Rebollar-Vega R, Quintanar-Jurado V, Maffuz-Aziz A, Jimenez-Sanchez G, Bautista-Piña V, Arellano-Llamas R, Hidalgo-Miranda A 22438871 Homo sapiens breast cancer GPL9731 75 GSE35602 microRNA and Gene expression profiles in colorectal cancer stromal tissue Mori M, Mimori K, Nishida N 22452939 Homo sapiens colorectal cancer GPL8227 59 GSE29965 microRNA expression in Barrett's esophagus and esophageal adenocarcinoma vanBaal JW, Siersema PD 22504665 Homo sapiens esophageal cancer GPL7722 12 GSE31045 MicroRNAs differentially expressed in liposarcoma Creighton C, Lev D, Zhang P 22350414 Homo sapiens sarcoma liposarcoma GPL7723 25 GSE29135 MicroRNA profiling and prediction of recurrence/relapse-free survival in stage I lung cancer Lu Y, Govindan R, You M 22331473 Homo sapiens lung cancer GPL8179 387 GSE29491 Combinatorial effects of microRNA to suppress the myc oncogenic pathway (miRNA data) Di Lisio L, Bueno MJ, Gómez-López G, Martínez N, Piris MA, Malumbres M 21478429 Homo sapiens lymphoma B cell lymphoma GPL8617 26 GSE28955 A set of 72 differentially expressed miRNAs provide a molecular signature for pancreatic cancer Laurila EM, Sandstrom S, Rantanen LM, Autio R, Kallioniemi A Homo sapiens pancreatic cancer GPL6955 23 GSE37407 The miRNA-200 family and miRNA-9 exhibit differential expression in primary vs. corresponding metastatic tissue in breast cancer Gravgaard KH, Lyng MB, Laenkholm A, Søkilde R, Nielsen BS, Litman T, Ditzel HJ 22294488 Homo sapiens breast cancer GPL13703 61 GSE28090 microRNA profiling of follicular lymphoma cells Wang W, Corrigan-Cummins M, Maric I, Simakova O, Neelapu SS, Kwak LW, Janik JE, Gause B, Jaffe ES, Calvo KR 22102710 Homo sapiens lymphoma B cell lymphoma GPL11487 25 GSE36682 MicroRNA Signatures Correlate with Diagnosis, Distant Metastasis and Prognosis in nasopharyngeal carcinoma Wei R, Wang H Homo sapiens nasopharyngeal carcinoma GPL15311 68 GSE35794 microRNA expression profile in endometrioid endometrial carcinoma (EEC) Torres A, Torres K Homo sapiens endometrial cancer GPL10850 22 GSE30656 Altered microRNA expression associated with chromosomal and epigenetic changes contributes to cervical carcinogenesis Wilting SM, Snijders PJ, Verlaat W, Bosman-Jaspers A, vandeWiel MA, vanWieringen WN, Meijer GA, Kenter GG, Yi Y, leSage C, Agami R, Meijer CJ, Steenbergen RD 22330141 Homo sapiens cervical cancer GPL6955 47 GSE32960 microRNA profile of human nasopharyngeal tissues: nasopharyngeal carcinoma tissues vs. normal nasopharyngeal tissues Ma J, Wang H, Liu N 23408429 Homo sapiens nasopharyngeal carcinoma GPL14722 330 GSE25631 Genome-wide analysis of microRNA expression in surgical specimens of primary glioblastoma multiform Zhang W, Jiang T 22570426 Homo sapiens brain cancer GPL8179 87 GSE33743 Lack of microRNA-101 causes E-cadherin expression and function deregulation through EZH2 up-regulation in gastric cancer Carvalho J, Seruca R, van Grieken NC, Pereira PM, Sousa S, Tijssen M, Buffart TE, Diosdado B, Grabsch H, Santos MA, Meijer G, Carvalho B, Oliveira C 22450781 Homo sapiens gastric cancer GPL14895 41 GSE36681 Increased miR-708 expression in NSCLC and its association with poor survival in lung adenocarcinoma from Never Smokers Jang JS, Jen J 22573352 Homo sapiens lung cancer GPL8179 206 GSE28100 Differential expression of microRNAs between oral squamous cell carcinoma and healthy control tongues Jung HM, Patel RS, Cheng JQ, Chan EK 22761427 Homo sapiens oral squamous cell carcinoma GPL10850 20 GSE29248 Genome-wide analysis of microRNA expression in Non-small Cell Lung Cancer Ma L, Liu X 22046296 Homo sapiens lung cancer GPL8179 12 GSE32957 Integrative Transcriptomic Profiling reveals Hepatic Stem-like Phenotype and Interplay of EMT and miR-200c in Intrahepatic Cholangiocarcinoma [miRNA] Oishi N, Wang XW 22707408 Homo sapiens liver cancer GPL14732 35 GSE37527 MiRNA expression analysis of cancer-associated fibroblasts (CAFs) and normal fibroblasts (NFs) in breast cancer Liu M, Zhao L 22964023 Homo sapiens breast cancer GPL14767 12 GSE39678 Oncogenic Potential of SIRT7 in Human Hepatocellular Carcinoma and its Regulation by the Tumor Suppressors MiR-125a-5p and MiR-125b Kim J, Noh J, Jung K, Eun J, Bae H, Kim M, Chang Y, Shen Q, Park W, Lee J, Borlak J, Nam S 23499894 Homo sapiens hepatocellular carcinoma GPL15852 24 GSE38389 The rectal cancer microRNAome - a comprehensive comparative analysis of microRNA expression in rectal cancer and matched normal mucosa Søkilde R, Gaedcke J, Grade M, Camps J, Kaczkowski B, Schetter AJ, Difilippantonio MJ, Harris CC, Ghadim M, Møller S, Beissbarth T, Ried T, Litman T 22850566 Homo sapiens colorectal cancer GPL11039 140 GSE41282 MicroRNA expression data from human renal cell cancer subtypes Wach S, Ekici AB, Reis A 23799849 Homo sapiens kidney cancer GPL8786 38 GSE28423 Modulation of the osteosarcoma expression phenotype by miRNAs [Agilent] Namløs HM, Meza-Zepeda LA, Barøy T, Østensen IH, Kresse SH, Kuijjer ML, Serra M, Bürger H, Cleton-Jansen A, Myklebost O 23133552 Homo sapiens sarcoma osteosarcoma GPL8227 23 GSE40525 miR-10b*, a master inhibitor of the cell cycle, is downregulated in human breast tumors Biagioni F, Bossel Ben-Moshe N, Fontemaggi G, Canu V, Mori F, Antoniani B, Di Benedetto A, Santoro R, Germoni S, De Angelis F, Cambria A, Avraham R, Grasso G, Strano S, Muti P, Mottolese M, Yarden Y, Domany E, Blandino G 23125021 Homo sapiens breast cancer GPL8227 120 GSE34460 Comparative microarray analysis of microRNA expression profiles in primary cutaneous malignant melanoma, cutaneous malignant melanoma metastases and benign melanocytic naevi Sand M, Skrygan M, Sand D, Georgas D, Gambichler T, Hahn SA, Altmeyer P, Bechara FG 23111773 Homo sapiens melanoma GPL15019 21 GSE38781 High-throughput microRNA (miRNAs) arrays in pancreatic cancer Giovannetti E, van der Velde A, Funel N, Vasile E, Perrone V, Leon LG, De Lio N, Avan A, Caponi S, Pollina LE, Sudo H, Falcone A, Campani D, Boggi U, Peters GJ 23155457 Homo sapiens pancreatic cancer GPL14903 19 GSE33125 Comparison of microarray platforms for measuring differential microRNA expression (Illumina data) De Cecco L, Callari M 23028787 Homo sapiens colon cancer GPL8179 18 GSE33332 Prospective isolation and characterization of renal cancer stem cells from human Wilms' tumor xenografts leads to tumor eradication Magister MJ, Kaminski N, Pode-Shakked N, Dekel B 23239665 Homo sapiens kidney cancer GPL10850 12 GSE39486 MicroRNA-138: A Pro-survival OncomiR for Glioma Stem Cells is Associated with Tumor Recurrence [miRNA] Sampath P, Nama S 22921398 Homo sapiens brain cancer glioma GPL15829 6 GSE33232 Cancer Outlier Gene Profile Sets Elucidate Pathways and Patient-Specific Targets in Head and Neck Squamous Cell Carcinoma Homo sapiens head and neck cancer GPL8786 284 GSE35982 Identifying microRNA-mRNA regulatory networks in colorectal cancer by a combination of expression profile and bioinformatics analysis Fu J, Tang W, Du P, Wang G, Chen W, Li J, Zhu Y, Gao J, Cui L 22703586 Homo sapiens colorectal cancer GPL14767 32 GSE19945 A small-cell lung cancer subtype with good prognosis found by a three miRNA signature Ohba T, Nagano H Homo sapiens lung cancer GPL9948 63 GSE36802 microRNA profiling in paired human prostate cancer and benign prostate tissue Lin PC, Chiu YL, Banerjee S, Demichelis F, Rubin MA 23233736 Homo sapiens prostate cancer GPL8786 42 GSE40744 Identification of microRNAs specifically expressed in HCV-associated hepatocellular carcinoma Diaz G, Melis M, Tice A, Kleiner DE, Mishra L, Zamboni F, Farci P 23390000 Homo sapiens hepatocellular carcinoma GPL14613 76 GSE33568 MicroRNA expression profiling of small-intestine neuroendocrine tumors and human neuroendocrine tumor cell lines Li S, Martijn C, Essaghir A, Lloyd RV, Demoulin J, Öberg K, Giandomenico V 23328977 Homo sapiens small intestinal neuroendocrine tumor GPL8786 25 GSE45264 miRNA expression in classical Hodgkin lymphoma diseased nodes Jones K, Gandhi MK, Keane C Homo sapiens lymphoma Hodgkin lymphoma GPL16770 22 GSE45604 Identification of miRNAs specific for prostate cancer (PCa) Lopez-Guerrero JA 24518785 Homo sapiens prostate cancer GPL14613 60 GSE36915 MicroRNA-214 downregulation contributes to tumor angiogenesis via inducing secretion of hepatoma-derived growth factor in human hepatoma Shih TC, Tien YJ, Wen CJ, Yeh TS 22613005 Homo sapiens hepatocellular carcinoma GPL8179 89 GSE31164 Over-expression of miR-18b is associated with the grade of malignancy of hepatocallular carcinoma Murakami Y, Tamori A, Itami S, Tanahashi T 23496901 Homo sapiens hepatocellular carcinoma GPL10850 110 GSE37053 Patterns of miRNA expression in primary plasma cell leukemias: implications for tumor progression in multiple myeloma Marta L, Pellegrino M, Sonia F, Luca A, Katia T, Laura M, Giacomo T, Vitina G, Gabriella B, Fiorella D, Teodora S, Carmela M, Luciana D, Maria Teresa P, Fortunato M, Massimo O, Francesco D, Antonietta F, Paola O, Mario B, Antonio P, Antonino N 23613318 Homo sapiens lymphoma multiple myeloma GPL8227 57 GSE47764 Cholangiocarcinoma tissues VS. corresponding normal bile duct tissues Peng F, Qin R 24169343 Homo sapiens liver cancer cholangiocarcinoma GPL11487 6 GSE29742 MIRnome Profiling of Hereditary Pheochromocytoma and Paraganglioma Reveals Specific Signatures According to Primary Mutation: Possible Implications in the Differentiation Status of Tumor Cells Robledo M, de Cubas AA, Lopez-Jimenez E 23660872 Homo sapiens neuroendocrine neoplasia GPL8227 54 GSE26595 MicroRNA expression of primary gastric adenocarcinoma compared to non-cancer gastric tissue Lee JS, Lim JY, Cho JY 24222951 Homo sapiens gastric cancer GPL8179 68 GSE40355 Bladder cancer: analysis of miRNA-mRNA interactions Hecker N, Stephan C, Mollenkopf HJ, Jung K, Preissner R, Meyer HA Homo sapiens bladder cancer GPL8227 48 GSE47582 miRNA expression in primary renal carcinomas, subgrouped based on HIF1α expression Lal P, Simon C 24189146 Homo sapiens kidney cancer GPL8786 26 GSE40345 Human Mesothelioma MicroRNA Study Part 1 Hoang CD, Xu Y 23828229 Homo sapiens mesothelioma GPL8179 31 GSE41874 Hepatocellular carcinoma (HCC) Morita K Homo sapiens hepatocellular carcinoma GPL7722 10 GSE45666 MicroRNA expression profile of breast cancer patients with adjacent normal control group Lee C, Kuo W, Oyang Y, Huang H, Juan H 23722663 Homo sapiens breast cancer GPL14767 116 GSE49246 The prognostic and predictive value of a six-microRNA-based classifier in stage II colon cancer Luo J, Xie D, Wang H 24239208 Homo sapiens colon cancer GPL17496 80 GSE32922 Comparison between hereditary breast tumors and normal breast tissue samples Tanic M, Gómez-López G, Benítez J, Martínez-Delgado B Homo sapiens breast cancer GPL7723 38 GSE41369 Combinatorial analysis of miRNA and mRNA expression in pancreatic ductal adenocarcinoma (PDAC)_miRNA Frampton AE 24120476 Homo sapiens pancreatic cancer GPL16142 18 GSE43796 microRNA expression of pancreatic tumors Kim H, Park M, Kim M 24072181 Homo sapiens pancreatic cancer GPL15159 31 GSE29622 Complementary Strand MicroRNAs Mediate Acquisition of Metastatic Potential in Colonic AdenocarcinomamRNA and microRNA profile in colon cancer Chen D, Yeatman T 22362069 Homo sapiens colon cancer GPL11162 65 GSE35834 Impact of miRNAs modulation on regulatory networks and pathways involved in colon cancer and metastasis development Bortoluzzi S, Zanovello P 23987127 Homo sapiens colon cancer GPL8786 158 GSE42906 Role of microRNAs and microRNA machinery in the pathogenesis of Diffuse large B-cell Lymphomas Caramuta S, Berglund M, Lee L, Özata D, Akçakaya P, Georgii-Hemming P, Hong X, Amini R, Enbland G, Larsson C, Lui W 24121164 Homo sapiens lymphoma GPL9081 55 GSE44124 profile miRNA expression in breast cancer Feliciano A, Castellvi J, Artero A, Leal JA, Romagosa C, Hernández J, Peg V, Fabra A, Vidal F, Kondoh H, Ramón y Cajal S, Lleonart ME 24098452 Homo sapiens breast cancer GPL14767 53 GSE47841 Expression data from high-grade serous ovarian carcinomas (HGSC), clear cell ovarian carcinomas (CCC) and ovarian surface epithelium (OSE) Elgaaen BV, Olstad OK, Haug KB, Brusletto B, Sandvik L, Staff AC, Gautvik KM, Davidson B 24512620 Homo sapiens ovarian cancer GPL14613 30 GSE50505 microRNA Profiling in Wilms Tumors and Kidney Tissues Liu M, Roth A, Yu M, Morris R, Bersani F, Rivera MN, Lu J, Shioda T, Vasudevan S, Ramaswamy S, Maheswaran S, Diederichs S, Haber DA 24298054 Homo sapiens kidney cancer Wilms tumor GPL17667 28 GSE51908 miRNA expression data from normal and Malignant hematopoietic cells Civin CI 25368993 Homo sapiens leukemia GPL8786 190 GSE54088 A systematic approach to the metastatically relevant microRNA landscape Abba M, Benner A 26069251 Homo sapiens colorectal cancer GPL8178 34 GSE54397 microRNA expressions in gastric cancer Chang H, Kim JM, Kim N 25167801 Homo sapiens gastric cancer GPL15159 32 GSE54492 miR-638 promotes melanoma metastasis and protects melanoma cells from apoptosis and autophagy (microRNA) Bhattacharya A, Schmitz U, Raatz Y, Schönherr M, Kottek T, Schauer M, Franz S, Saalbach A, Anderegg U, Wolkenhauer O, Schadendorf D, Simon JC, Magin T, Vera J, Kunz M 25650662 Homo sapiens melanoma GPL10262 25 GSE31277 MicroRNA expression profile in Head and Neck Cancer: HOX-cluster embedded microRNA-196 and microRNA-10b dysregulation is implicated in cell proliferation Severino P, Brüggemann H, Borges F, Pereira WO, Andreghetto FM, Camps C, de Fatima Garrido Klingbeil M, de Oliveira Pereira W, Soares RM, Moyses R, Wünsch-Filho V, Mathor MB, Nunes FD, Ragoussis J, Tajara EH 24209638 Homo sapiens head and neck cancer GPL9770 42 GSE38167 Decreased expression of key tumour suppressor microRNAs is associated with lymph node metastases in triple negative breast cancer Avery-Kiejda KA, Braye SG, Forbes JF, Scott RJ 24479446 Homo sapiens breast cancer GPL14943 67 GSE40807 MiRNA expression profiling in human medullary thyroid carcinoma Lassalle S, Hofman P, Mari B, Henaoui I, Barbry P, Lebrigand K 27036030 Homo sapiens thyroid cancer GPL8227 80 GSE41012 Dynamic Transcriptome Analysis Reveal New Prognosis Biomarker in Colorectal Cancer (miRNA) Li X Homo sapiens colorectal cancer GPL7724 35 GSE41032 miRNA profiles of brain glioma stem cells and normal neural stem cells Liu S 24519663 Homo sapiens brain cancer glioma GPL15516 6 GSE41655 MicroRNA expression profiling of colorectal normal mucosa, adenoma and adenocarcinoma tissues Shi X, Zhang Y, Cao B, Lu N, Feng L, Di X, Han N, Luo C, Wang G, Cheng S, Zhang K Homo sapiens colorectal cancer GPL11487 107 GSE43039 microRNA expression profiling of human nasopharyngeal Carcinoma tissues and Chronic Nasopharyngitis specimens Li X, Ye Y 24606633 Homo sapiens nasopharyngeal carcinoma GPL16414 40 GSE44899 miRNA expression profiling in hereditary breast tumors Tanic M, Martinez-Delgado B, Benitez J, Marquez-Rodas I, Rodriguez-Pinilla MS, Fernandez V, Osorio A 24917463 Homo sapiens breast cancer GPL7723 80 GSE45238 Identification of oral carcinoma miRNA involved in Wnt/b-catenin signaling Shiah S, Hsiao J, Chang J 25351956 Homo sapiens oral squamous cell carcinoma GPL8179 80 GSE45364 MicroRNA expression profiles distinguish liposarcoma subtypes and implicate miR-145 and miR-451 as tumor suppressors Erik Wiemer 24375455 Homo sapiens sarcoma liposarcoma GPL16851 115 GSE48088 Expression of miRNAs in breast tumor from very youn women (<36) and women above 65 years old Peña-Chilet M, Martínez MT, Pérez-Fidalgo JA, Lluch A, Bosch A, Climent J, Burgues O, Ferrer J, Martinez-Delgado B, Tormo E, Eroles P, Peiro-Chova L, Ribas G 25047087 Homo sapiens breast cancer GPL14613 36 GSE48267 Differential Expression of miRNAs: Implication in Colon Cancer Racial Health Disparity Li E, Williams J 24865442 Homo sapiens colon cancer GPL10850 122 GSE51853 Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features [miRNA analysis - miRNA Microarray, pre-commercial version 6.0] Arima C, Kajino T, Tamada Y, Imoto S, Shimada Y, Nakatochi M, Suzuki M, Isomura H, Yatabe Y, Yamaguchi T, Yanagisawa K, Miyano S, Takahashi T 24903339 Homo sapiens lung cancer GPL7341 131 GSE53870 microRNA profile of human intrahepatic cholangiocarcinoma: intrahepatic cholangiocarcinoma vs. normal intrahepatic bile duct tissue Zhang M, Li S, Wang H Homo sapiens liver cancer cholangiocarcinoma GPL18118 72 GSE53992 The miRNAome of O. viverrini induced cholangiocarcinoma by microarray Plieskatt JL, Feng Y, Peng J, Yonglitthipagon P, Rinaldi G, Easley S, Lee N, Laha T, Sripa B, Brindley PJ, Mulvenna JP, Bethony JM 25017828 Homo sapiens liver cancer cholangiocarcinoma GPL18159 46 GSE56183 Integrated miRNA-mRNA analysis revealing the potential roles of miRNAs in chordomas Long C, Jiang L, Wei F, Ma C, Zhou H, Yang S, Liu X, Liu Z Homo sapiens chordoma GPL14613 12 GSE56350 MicroRNA profiles discriminate among colon cancer metastasis Drusco A, Croce CM 24921248 Homo sapiens colorectal cancer GPL16744 104 GSE57370 miRNA expression profiles in Wilms tumor subtypes Ludwig N, Schmitt J 25670083 Homo sapiens kidney cancer Wilms tumor GPL16770 66 GSE57555 mRNA/microRNA expression profiles of HCC or CCC patients' liver, together with those of non-tumor part tissues Taguchi Y, Murakami Y 26538415 Homo sapiens hepatocellular carcinoma GPL18044 64 GSE57768 MicroRNA Expression in Cutaneous Squamous Cell Carcinoma Toland A 25764000 Homo sapiens skin cancer GPL17537 48 GSE60978 mRNA and miRNA expression profiles for fresh frozen periampullary adenocarcinomas (pancreatobiliary and intestinal type) and adjacent normal tissues. [miRNA] Sandhu V, Kure EH 25579086 Homo sapiens pancreatic cancer GPL15159 89 GSE61438 Comparative microRNA profiling of sporadic and BRCA1 associated basal-like breast cancers Yan M Homo sapiens breast cancer GPL8179 69 GSE62054 A two miRNA classifier differentiates follicular thyroid carcinomas from follicular thyroid adenomas Stokowy T, Eszlinger M, Paschke R Homo sapiens thyroid cancer GPL8179 25 GSE63805 Multi-platform Characterization of Stage I Lung Adenocarcinoma (miRNA profiling) Robles AI, Harris CC 26134223 Homo sapiens lung cancer lung adenocarcinoma GPL18410 62 GSE64318 MicroRNA expression profiling of the prostate biopsy samples from African American and European American prostate cancer patients Wang B, Lee NH 26089375 Homo sapiens prostate cancer GPL8227 54 GSE65819 Whole genome characterisation of chemoresistant ovarian cancer [NanoString miRNA] Christie EL, Etemadmoghadam D, Garsed DW, George J, Fereday S, Nones K, Cowin P, Alsop K, Bailey PJ, Kassahn KS, Newell F, Quinn MC, Kazakoff S, Quek K, Wilhelm-Benartzi C, Curry E, San H, Leong S, Hamilton A, Mileshkin L, Au-Yeung G, Kennedy C, Hung J, Chiew YE, Harnett P, Friedlander M, 26017449 Homo sapiens ovarian cancer GPL19765 121 GSE66274 Integrative genomics analysis of genes with biallelic loss and its relation to the expression of mRNA and micro-RNA in esophageal squamous cell carcinoma Hu N, Taylor PR, Yang HH 26409826 Homo sapiens esophageal cancer GPL19823 60 GSE67354 miR-495 regulates multiple epigenetic modifiers in gastric cancer Shin W, Bae H, Eun J, Shen Q, Kim H, Yang H, Ahn H, Kim H, Park W, Lee J, Nam S Homo sapiens gastric cancer GPL19952 10 GSE69580 Differential miRNA expression profiles betweenHBV-related HCC tumor versus non-tumor liver tissue Hung C, Yen C Homo sapiens hepatocellular carcinoma GPL10850 10 GSE70574 microRNA profiles for lymph node metastasis in T1-stage colorectal cancers Jung S, Chung Y Homo sapiens colorectal cancer GPL15018 16 GSE73487 MicroRNA signatures of colonic adenomas according to histology Tsikitis VL, Potter A, Mori M, Buckmeier JA, Preece CR, Harrington C, Bartley A, Battacharrya A, Hamilton S, Lance P, Thompson P Homo sapiens colon cancer GPL8786 113 GSE74190 The miRNA expression profiles in three subtypes of lung carcinomas Jin Y, Liu YL, Lu SH Homo sapiens lung cancer GPL19622 136 GSE75630 Tonsil cancer compared with normal tonsil tissue Tran N 26867589 Homo sapiens tonsil cancer GPL21198 46 GSE76260 miRNA expression profiling in prostate cancer and non-neoplastic tissues Gandellini P, De Cecco L, Dugo M Homo sapiens prostate cancer GPL8179 64 GSE77380 MicroRNA expression profiles of pulmonary and gastrointestinal carcinoid tumors Yoshimoto T, Ishikawa Y Homo sapiens lung cancer, colorectal cancer, gastric cancer GPL16770 108 GSE80038 The microRNAs with potential in predicting lung metastasis of triple negative breast cancer Wang J, Xie X Homo sapiens breast cancer GPL18044 20 GSE24709 Peripheral profiles from patients with cancerous and non cancerous lung diseases Keller A, Leidinger P Homo sapiens lung cancer GPL9040 71 GSE25609 Plasma microRNA profiling by microarray elucidates several candidate biomarkers for colorectal cancer screening Giraldez MD, Lozano JJ, Ramirez G, Castells A, Gironella M Homo sapiens colon cancer colonic adenomas GPL8179 77 GSE27486 Whole blood microRNA expression profiles in human non-small cell lung adenocarcinoma Patnaik SK 23029380 Homo sapiens lung cancer non-small cell lung adenocarcinoma GPL11432 45 GSE31309 miRNA expression profiling in early stage breast cancer Schrauder M 22242178 Homo sapiens breast cancer invasive ductal carcinoma GPL14132 105 GSE31568 The human Whole miRNOme project version 1 Keller A, Leidinger P 21892151 Homo sapiens pancreatic cancer, melanoma, prostate cancer, ovarian cancer, gastric cancer GPL9040 453 GSE31801 Evaluation of microRNA expression profiles and their associations with risk alleles in lymphoblastoid cell lines of familial ovarian cancer Shen J, Wang D, Gregory S, Medico L, Hu Q, Odunsi K, Lele SB, Ambrosone CB, Liu S, Zhao H 22235027 Homo sapiens ovarian cancer familial GPL8179 121 GSE38419 miRNA profiles of Wilms tumor patients and controls Keller A, Backes C 22871070 Homo sapiens kidney cancer Wilms tumor  GPL9040 42 GSE39845 Tissue and blood microRNA array profiles of colorectal cancer patients Yong FL, Law CW, Wang CW 23758639 Homo sapiens colon cancer GPL14613 26 GSE41321 Differential microRNA expression profiles in Retinoblastoma serum Beta M, Venkatesan N, Khetan V, Vasudevan M, Subramanian K 23400111 Homo sapiens retinoblastoma GPL148767 6 GSE41922 Clinical Utility of Circulating MicroRNA Signatures for Breast Cancer Diagnosis (RT-PCR) Chan M, Liaw CS, Ji SM, Tan HH et al. 23797906 Homo sapiens breast cancer GPL16224 54 GSE48137 Circulating miRNA in serum of Wilms tumor patients Ludwig N, Schmitt J Homo sapiens kidney cancer Wilms tumor  GPL16770 102 GSE55993 What makes the blood cell-based miRNome disease specific? - miRNA analysis of leukocyte subsets in lung cancer patients and controls Leidinger P, Backes C 25344866 Homo sapiens lung cancer lung adenocarcinoma GPL16770 80 GSE59856 MicroRNA markers for the diagnosis of pancreatic and biliary tract cancers Kojima M, Sudo H, Kawauchi J, Takizawa S, Kondou S, Nobumasa H, Ochiai A 25706130 Homo sapiens pancreatic cancer, biliary tract cancer, colon cancer, gastric cancer, esophagus cancer, liver cancer GPL18941 571 GSE65071 Plasma profiling of miRNAs in human specimens from osteosarcoma patients. Yustein J, Allen-Rhoades W 25784290 Homo sapiens sarcoma osteosarcoma GPL19631 35 GSE71043 Expression profile of plasma microRNAs in esophageal cancer Liao J, Liu R, Shi Y, Yin L, Pu Y Homo sapiens esophageal cancer GPL18042 6 GSE37406 Study of microRNA associated with metformin’s anti-tumor effect [pancreatic cancer] Kato K, Masaki T Homo sapiens pancreatic cancer GPL14903 24 GSE46188 Analyses of mIRNA transcript level following exposure to triptolide Sarver A 23635652 Homo sapiens pancreatic adenocarcinoma GPL8179 42 GSE50224 MIcroRNA expression profiling of chemotherapy resistant esophageal adeno- and squamous cell carcinoma cell lines Hussey DJ, Van der Hoek MB, Hummel R, Sie C, Watson DI, Wang T, Ansar A, Michael MZ, Haier J Homo sapiens esophageal cancer GPL8786 36 GSE53850 miRNA expression profiling of Human Myeloma Cell Lines Pre- and Post- 5'azacytidine Treatment Bi C, Chng WJ Homo sapiens lymphoma myeloma GPL16770 8 GSE62137 miRNA regulation by interleukin-4 (IL-4) in chronic lymphocytic leukemia (CLL) Parrado A Homo sapiens chronic lymphocytic leukemia GPL14767 44 GSE63159 microRNA expression signatures of imatinib-treated and non-treated gastrointestinal stromal tumors Akçakaya P, Zeljic K, Åhlen J, Gangaev A, Ghaderi M, Caramuta S, Berglund E, Bränström R, Larsson C, Lui W Homo sapiens gastrointestinal stromal tumor GPL10656 34 GSE67257 Study of microRNA associated with the anti-tumor effect of gemcitabine Toyota Y, Masaki T 26252371 Homo sapiens liver cancer cholangiocellular carcinoma GPL18941 20 GSE74562 In vitro microRNA screening in human pancreatic adenocarcinoma Dhayat SA, Seggewiß J Homo sapiens pancreatic adenocarcinoma GPL14613 8 TCGA_BRCA Homo sapiens breast cancer breast invasive carcinoma miRNA-seq 1163 TCGA_KIRP Homo sapiens kidney cancer kidney renal papillary cell carcinoma miRNA-seq 324 TCGA_KIRC Homo sapiens kidney cancer kidney renal clear cell carcinoma miRNA-seq 583 TCGA_KICH Homo sapiens kidney cancer kidney chromophobe miRNA-seq 91 TCGA_LUAD Homo sapiens lung cancer lung adenocarcinoma miRNA-seq 555 TCGA_LUSC Homo sapiens lung cancer lung squamous cell carcinoma miRNA-seq 518 TCGA_UCEC Homo sapiens uterus cancer uterine corpus endometrial carcinoma miRNA-seq 621 TCGA_COAD Homo sapiens colon cancer colon adenocarcinoma miRNA-seq 450 TCGA_READ Homo sapiens colorectal cancer rectum adenocarcinoma miRNA-seq 161 TCGA_HNSC Homo sapiens head and neck cancer head and neck squamous cell carcinoma miRNA-seq 564 TCGA_THCA Homo sapiens thyroid cancer thyroid carcinoma miRNA-seq 566 TCGA_PRAD Homo sapiens prostate cancer prostate adenocarcinoma miRNA-seq 532 TCGA_STAD Homo sapiens gastric cancer stomach adenocarcinoma miRNA-seq 475 TCGA_LIHC Homo sapiens liver cancer liver hepatocellular carcinoma miRNA-seq 420 TCGA_CESC Homo sapiens cervical cancer cervical squamous cell carcinoma and endocervical adenocarcinoma miRNA-seq 304 TCGA_ACC Homo sapiens adrenocortical tumor adrenocortical carcinoma miRNA-seq 80 TCGA_PAAD Homo sapiens pancreatic cancer pancreatic adenocarcinoma miRNA-seq 183 TCGA_ESCA Homo sapiens esophageal cancer esophageal carcinoma miRNA-seq 187 TCGA_CHOL Homo sapiens liver cancer cholangiocarcinoma miRNA-seq 45 TCGA_SKCM Homo sapiens skin cancer skin cutaneous melanoma miRNA-seq 449 TCGA_BLCA Homo sapiens bladder cancer bladder urothelial carcinoma miRNA-seq 426 TCGA_TGCT Homo sapiens testicular cancer testicular germ cell tumors miRNA-seq 149