Entry Detail



General Information

Database ID:exR0017081
RNA Name:AARS2
RNA Type:mRNA
Chromosome:chr6
Starnd:-
Coordinate:
Start Site(bp):44298731End Site(bp):44313347
External Links:ENSG00000124608



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
COX5A
chr15
74919791
74938083
-
HSP90AB1
chr6
44246166
44253888
+
DENND5A
chr11
9138825
9265350
-
SFT2D3
chr2
127701497
127705242
+
USP22
chr17
20999596
21043760
-
SRSF5
chr14
69726900
69772005
+
FAM83D
chr20
38926312
38953106
+
RRP12
chr10
97356358
97426076
-
WDR27
chr6
169457212
169702067
-
KPNB1
chr17
47649476
47685505
+
RAD23A
chr19
12945855
12953642
+
RBM8A
chr1
145917714
145927678
-
TIMELESS
chr12
56416363
56449426
-
MIDN
chr19
1248553
1259140
+
MT-ND2
chrMT
4470
5511
+
GRAMD1A
chr19
34994784
35026471
+
TM9SF3
chr10
96518110
96587452
-
TP53I11
chr11
44885903
44951306
-
HSP90B1
chr12
103930107
103953645
+
NDFIP1
chr5
142108779
142154440
+
USP35
chr11
78188812
78215232
+
RPL13
chr16
89560657
89566828
+
EIF3C
chr16
28688558
28735730
+
DPPA4
chr3
109326141
109337572
-
ARSA
chr22
50622754
50628173
-
TBL1XR1
chr3
177019340
177228000
-
WDR74
chr11
62832342
62841809
-
ORAI3
chr16
30949068
30956461
+
PTOV1
chr19
49850735
49860744
+
PML
chr15
73994673
74047827
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC102953.2
chr7
1464497
1467522
-
AL355075.4
chr14
20343048
20343685
-
EBLN3P
chr9
37079645
37090928
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA