Entry Detail



General Information

Database ID:exR0017088
RNA Name:ABAT
RNA Type:mRNA
Chromosome:chr16
Starnd:+
Coordinate:
Start Site(bp):8674596End Site(bp):8784575
External Links:ENSG00000183044



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ARFIP2
chr11
6474683
6481479
-
BTNL9
chr5
181040225
181061521
+
ESRP1
chr8
94641074
94707466
+
HNRNPA1P48
chr16
51553436
51647132
+
LSM14B
chr20
62122461
62135374
+
MEA1
chr6
43011143
43016868
-
PTCD2
chr5
72320367
72368395
+
RHBDF2
chr17
76470891
76501790
-
RPS28
chr19
8321158
8323340
+
RPS6
chr9
19375715
19380236
-
SENP6
chr6
75601509
75718281
+
SNRPD2
chr19
45687454
45692569
-
SP2
chr17
47896150
47928957
+
SPTLC1
chr9
92000087
92115413
-
TMEM9
chr1
201134772
201171574
-
USP7
chr16
8892097
8975328
-
ZBTB11
chr3
101648889
101677132
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-485-5p
chr14
101055427
101055448
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
ALDH1L1-AS2
chr3
126180012
126210169
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA