Entry Detail



General Information

Database ID:exR0017092
RNA Name:ABCA2
RNA Type:mRNA
Chromosome:chr9
Starnd:-
Coordinate:
Start Site(bp):137007234End Site(bp):137028922
External Links:ENSG00000107331



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
STK11
chr19
1177558
1228431
+
SLC36A4
chr11
93144174
93197991
-
KBTBD11
chr8
1973677
2006936
+
BMP2K
chr4
78776342
78916372
+
EXOC7
chr17
76081016
76121576
-
SMG5
chr1
156249224
156282825
-
SPECC1L
chr22
24270817
24417739
+
XXYLT1
chr3
195068284
195271159
-
NIP7
chr16
69337996
69343106
+
MYL5
chr4
673580
682033
+
RBPJ
chr4
26163455
26435131
+
REEP5
chr5
112876385
112922289
-
GANAB
chr11
62624826
62646726
-
DDX6
chr11
118747763
118791164
-
METTL26
chr16
634427
636366
-
ACAP3
chr1
1292390
1309609
-
LRP5
chr11
68312591
68449275
+
SUPT5H
chr19
39436156
39476670
+
MCM2
chr3
127598410
127622436
+
HNRNPK
chr9
83968083
83980616
-
FLNA
chrX
154348524
154374638
-
SRRM2
chr16
2752626
2772538
+
POMGNT1
chr1
46188682
46220305
-
PLXNA1
chr3
126988594
127037392
+
HDGFL3
chr15
83112738
83207823
-
YWHAQ
chr2
9583967
9630997
-
LMAN2
chr5
177331567
177351668
-
HECA
chr6
139135080
139180802
+
SEC24C
chr10
73744372
73772161
+
EXTL3
chr8
28600469
28755599
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-1286
chr22
20249145
20249165
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AC067930.1
chr8
143579636
143580670
+
AD000090.1
chr19
35557956
35581954
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA