Entry Detail



General Information

Database ID:exR0017110
RNA Name:ABCC10
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):43427366End Site(bp):43450427
External Links:ENSG00000124574



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
GTPBP1
chr22
38705742
38738299
+
PUM1
chr1
30931506
31065991
-
ELMSAN1
chr14
73715122
73790285
-
ZNF462
chr9
106863166
107013634
+
RPL13
chr16
89560657
89566828
+
DIP2A
chr21
46458891
46570015
+
YWHAG
chr7
76326799
76358991
-
DNMT1
chr19
10133345
10231286
-
ERCC2
chr19
45349837
45370918
-
EGFL7
chr9
136658856
136672678
+
MAP3K11
chr11
65597756
65615382
-
RPL18A
chr19
17859910
17864153
+
CLEC2D
chr12
9664969
9699553
+
SPATA20
chr17
50543058
50555852
+
SLC12A9
chr7
100826820
100867010
+
DYRK2
chr12
67648338
67665406
+
SF3A2
chr19
2236824
2248655
+
NCOA6
chr20
34689097
34825651
-
PLCG1
chr20
41136960
41196801
+
FBN2
chr5
128257909
128659185
-
MCCC2
chr5
71587288
71658706
+
AP5B1
chr11
65773898
65780976
-
UBAC1
chr9
135932969
135961373
-
MMADHC
chr2
149569637
149587778
-
PKMYT1
chr16
2968024
2980479
-
UGP2
chr2
63840940
63891562
+
FAM3A
chrX
154506159
154516242
-
NOTCH2
chr1
119911553
120100779
-
IMP3
chr15
75639085
75648706
-
PHGDH
chr1
119648411
119744226
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-6780b-3p
chr6
43434600
43434620
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007952.4
chr17
19112000
19112636
-
AC092139.1
chr16
81385463
81387560
+
AP001266.1
chr11
65795946
65797219
-
LINC01248
chr2
5602505
5691488
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA