Entry Detail



General Information

Database ID:exR0017115
RNA Name:ABCC4
RNA Type:mRNA
Chromosome:chr13
Starnd:-
Coordinate:
Start Site(bp):95019835End Site(bp):95301475
External Links:ENSG00000125257



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
KIF7
chr15
89608789
89655467
-
ERFE
chr2
238158970
238168900
+
POLR3D
chr8
22245133
22254601
+
SLC5A6
chr2
27199587
27212958
-
PIGC
chr1
172370189
172444086
-
AC007192.1
chr19
18153158
18178117
+
NDUFA10
chr2
239892450
240025345
-
ZBTB21
chr21
41986831
42010387
-
RUVBL1
chr3
128064778
128153914
-
ZDHHC20
chr13
21372573
21459370
-
IFI6
chr1
27666064
27672198
-
MYO1G
chr7
44962662
44979088
-
DPPA4
chr3
109326141
109337572
-
CCT8
chr21
29055805
29073797
-
BASP1
chr5
17065598
17276843
+
FNBP1
chr9
129887187
130043194
-
LTBP4
chr19
40592883
40629818
+
LARP1
chr5
154712843
154817605
+
RPL4
chr15
66498015
66524532
-
RRM1
chr11
4094707
4138932
+
SPOUT1
chr9
128819651
128829794
-
LLGL2
chr17
75525080
75575208
+
SACS
chr13
23328826
23433740
-
RPL27A
chr11
8682788
8714759
+
YIPF5
chr5
144158162
144170714
-
SRP14
chr15
40035690
40039181
-
FKBP8
chr19
18531751
18544077
-
KMT2B
chr19
35717973
35738878
+
DDX41
chr5
177511577
177516961
-
ING3
chr7
120950763
120977216
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
CRTC3-AS1
chr15
90620007
90717141
-
DLEU1
chr13
50082169
50906856
+
MALAT1
chr11
65497688
65506516
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA