Entry Detail



General Information

Database ID:exR0017156
RNA Name:ABI3
RNA Type:mRNA
Chromosome:chr17
Starnd:+
Coordinate:
Start Site(bp):49210411End Site(bp):49223225
External Links:ENSG00000108798



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010422.3
chr19
12643831
12648397
-
ANKRD46
chr8
100509752
100559784
-
CDC37
chr19
10391133
10420121
-
CFLAR
chr2
201116154
201176687
+
ETAA1
chr2
67397322
67412089
+
GRK2
chr11
67266473
67286556
+
HSPA8
chr11
123057489
123063230
-
LMNB2
chr19
2427638
2456959
-
MSN
chrX
65588377
65741931
+
MYL6B
chr12
56152256
56159647
+
PBK
chr8
27809624
27838082
-
PPP1R32
chr11
61481120
61490931
+
PPP4C
chr16
30075978
30085376
+
PTDSS2
chr11
448268
491399
+
RHOG
chr11
3826978
3840959
-
RPL8
chr8
144789765
144792587
-
RPS8
chr1
44775251
44778779
+
SKP1
chr5
134148935
134177038
-
TMEM216
chr11
61392360
61398863
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA