Entry Detail



General Information

Database ID:exR0017187
RNA Name:ACAT1
RNA Type:mRNA
Chromosome:chr11
Starnd:+
Coordinate:
Start Site(bp):108116695End Site(bp):108147603
External Links:ENSG00000075239



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ATP2A2
chr12
110280756
110351093
+
MTRNR2L8
chr11
10507894
10509186
-
TRIP10
chr19
6737925
6751530
+
NPEPPS
chr17
47522942
47623276
+
DAPK1
chr9
87497228
87708634
+
PSMB5
chr14
23016543
23035230
-
CCDC102A
chr16
57512181
57536571
-
FZD3
chr8
28494205
28574267
+
NCAM1
chr11
112961247
113278436
+
PRDX4
chrX
23664262
23686397
+
PSMD10
chrX
108084207
108091549
-
PGK1
chrX
77910739
78129295
+
HSP90AB1
chr6
44246166
44253888
+
NPIPB2
chr16
11927259
11976643
-
TXNRD1
chr12
104215779
104350307
+
MRPL47
chr3
179588285
179604649
-
AC010422.3
chr19
12643831
12648397
-
GHITM
chr10
84139509
84153568
+
POU3F3
chr2
104853287
104858574
+
RPS4X
chrX
72255679
72277248
-
DAP3
chr1
155687960
155739010
+
EEF1A1
chr6
73515750
73523797
-
GLI2
chr2
120735623
120992653
+
IER3IP1
chr18
47152834
47176364
-
RPLP1
chr15
69452814
69456205
+
ACTG1
chr17
81509971
81523847
-
IGFBP2
chr2
216632828
216664436
+
NUP205
chr7
135557917
135648757
+
ACTB
chr7
5527148
5563784
-
TXNDC16
chr14
52430596
52552522
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
MIR155HG
chr21
25561909
25575168
+
POLR2J4
chr7
43940895
44019175
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA