Entry Detail



General Information

Database ID:exR0017218
RNA Name:ACOT9
RNA Type:mRNA
Chromosome:chrX
Starnd:-
Coordinate:
Start Site(bp):23701055End Site(bp):23766475
External Links:ENSG00000123130



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CALM2
chr2
47160083
47176921
-
NKX1-2
chr10
124445243
124450035
-
PKP3
chr11
392614
404908
+
GDI2
chr10
5765223
5842132
-
RPLP1
chr15
69452814
69456205
+
TTLL3
chr3
9808086
9855138
+
KPNA5
chr6
116681187
116741867
+
PKN2
chr1
88684222
88836255
+
PLEKHB2
chr2
131104847
131353709
+
AIP
chr11
67483026
67491103
+
MT-CO2
chrMT
7586
8269
+
NUP155
chr5
37288137
37371106
-
PIEZO1
chr16
88715338
88785220
-
N4BP2L2
chr13
32432417
32538885
-
OCLN
chr5
69492292
69558104
+
CEP55
chr10
93496612
93529092
+
HLA-C
chr6
31268749
31272130
-
PNPO
chr17
47941506
47949308
+
MYDGF
chr19
4641374
4670362
-
SSBP1
chr7
141738334
141787922
+
NECAP2
chr1
16440721
16460078
+
RPS16
chr19
39433137
39435949
-
HMGCS1
chr5
43287470
43313512
-
DICER1
chr14
95086228
95158010
-
ANKRD46
chr8
100509752
100559784
-
PCBP1
chr2
70087477
70089203
+
PHTF2
chr7
77798792
77957503
+
RGS1
chr1
192575763
192580024
+
ADNP
chr20
50888916
50931437
-
CD74
chr5
150400041
150412929
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
JPX
chrX
73944182
74070408
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA