Entry Detail



General Information

Database ID:exR0017248
RNA Name:ACTA2
RNA Type:mRNA
Chromosome:chr10
Starnd:-
Coordinate:
Start Site(bp):88935074End Site(bp):88991339
External Links:ENSG00000107796



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ZNF516
chr18
76357682
76495242
-
HNRNPDL
chr4
82422564
82430408
-
RPS16
chr19
39433137
39435949
-
HLA-B
chr6
31269491
31357188
-
ATP5F1B
chr12
56638175
56645984
-
TMSB4X
chrX
12975110
12977227
+
HLA-A
chr6
29941260
29945884
+
POTEF
chr2
130073535
130129222
-
GCN1
chr12
120127202
120194715
-
HNRNPH3
chr10
68331174
68343191
+
TRAP1
chr16
3651639
3717553
-
ATP5PB
chr1
111448864
111462773
+
PWWP2B
chr10
132397168
132417859
+
PHF23
chr17
7235029
7239722
-
HLA-DMA
chr6
32948613
32969094
-
RPS8
chr1
44775251
44778779
+
PEX2
chr8
76980258
77001044
-
BAIAP2L1
chr7
98291650
98401090
-
CLUH
chr17
2689386
2712663
-
UQCRC1
chr3
48599002
48610976
-
CCT7
chr2
73233420
73253021
+
HLA-DQA1
chr6
32628179
32647062
+
ACTG1
chr17
81509971
81523847
-
CNBP
chr3
129169484
129183922
-
PTTG1
chr5
160421855
160428739
+
ATN1
chr12
6924463
6942321
+
DDIT4
chr10
72273924
72276036
+
POLN
chr4
2071918
2242121
-
RAB12
chr18
8609437
8639382
+
RARA
chr17
40309180
40357643
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC139149.1
chr17
81514047
81527776
+
AC013269.1
chr2
130530275
130537182
+
MALAT1
chr11
65497688
65506516
+
NEAT1
chr11
65422774
65445540
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA