Entry Detail



General Information

Database ID:exR0017254
RNA Name:ACTL6A
RNA Type:mRNA
Chromosome:chr3
Starnd:+
Coordinate:
Start Site(bp):179562886End Site(bp):179588407
External Links:ENSG00000136518



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RNF167
chr17
4940008
4945222
+
FIGN
chr2
163593396
163736012
-
NPTX2
chr7
98617285
98629869
+
ASGR1
chr17
7173431
7179564
-
SIX4
chr14
60709539
60724351
-
RUFY1
chr5
179550554
179610012
+
PABPC1
chr8
100685816
100722809
-
AC015813.2
chr17
57989038
58007246
-
EEF2
chr19
3976056
3985463
-
AC084337.2
chr11
6481485
6508978
+
PRPF8
chr17
1650629
1684867
-
MT-ND1
chrMT
3307
4262
+
CALM1
chr14
90396502
90408268
+
INTS6
chr13
51354077
51454264
-
HSPA5
chr9
125234853
125241343
-
RPL38
chr17
74203582
74210655
+
TUBB
chr6
30720352
30725426
+
GATA2
chr3
128479427
128493201
-
ALPL
chr1
21509397
21578410
+
KMT2A
chr11
118436490
118526832
+
RHOA
chr3
49359145
49412998
-
GHITM
chr10
84139509
84153568
+
MT-CO3
chrMT
9207
9990
+
RPS16
chr19
39433137
39435949
-
NRBP1
chr2
27427790
27442259
+
OAZ1
chr19
2269509
2273490
+
B3GNT2
chr2
62196115
62224731
+
YPEL3
chr16
30092314
30096915
-
JAKMIP1
chr4
6026199
6200591
-
WDYHV1
chr8
123416726
123470028
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
ARMCX5-GPRASP2
chrX
102599512
102714671
+
RMRP
chr9
35657751
35658018
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA