Entry Detail



General Information

Database ID:exR0017271
RNA Name:ACTR5
RNA Type:mRNA
Chromosome:chr20
Starnd:+
Coordinate:
Start Site(bp):38748460End Site(bp):38772520
External Links:ENSG00000101442



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ATP5PF
chr21
25716503
25735673
-
DPP3
chr11
66480013
66509657
+
FUS
chr16
31180110
31194871
+
HNRNPA1
chr12
54280193
54287088
+
IGF2
chr11
2129112
2141238
-
MATR3
chr5
139273752
139331671
+
MBTPS2
chrX
21839617
21885423
+
NDUFA4
chr7
10931943
10940153
-
OS9
chr12
57693955
57721557
+
RAB1B
chr11
66268590
66277492
+
RAN
chr12
130872037
130877678
+
RPL8
chr8
144789765
144792587
-
RPLP0
chr12
120196699
120201235
-
SLC3A2
chr11
62856102
62888875
+
STMN1
chr1
25884181
25906991
-
TATDN1
chr8
124488485
124539458
-
USP3
chr15
63504511
63594640
+
ZNF618
chr9
113876282
114056591
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AP000233.2
chr21
25095022
25103670
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA