Entry Detail



General Information

Database ID:exR0017280
RNA Name:ACVR2B
RNA Type:mRNA
Chromosome:chr3
Starnd:+
Coordinate:
Start Site(bp):38453890End Site(bp):38493142
External Links:ENSG00000114739



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
SF3A3
chr1
37956975
37990075
-
LSM4
chr19
18306230
18323274
-
DDX17
chr22
38483438
38507660
-
MTCH1
chr6
36968141
36986298
-
BCL6
chr3
187721377
187745725
-
TCOF1
chr5
150357629
150400308
+
LZTS2
chr10
100996618
101007836
+
PACSIN2
chr22
42835412
43015149
-
CBY1
chr22
38656636
38673854
+
ZDBF2
chr2
206274663
206314427
+
UNC45A
chr15
90930180
90954093
+
FAM111B
chr11
59107185
59127412
+
UBE3B
chr12
109477402
109536705
+
DNAAF2
chr14
49625174
49635230
-
GPAM
chr10
112149865
112215377
-
CHRFAM7A
chr15
30357766
30393849
-
SORD
chr15
45023181
45077185
+
HSPA5
chr9
125234853
125241343
-
MT-CO3
chrMT
9207
9990
+
TBC1D15
chr12
71839707
71927248
+
MYO7A
chr11
77128246
77215241
+
TUBA1B
chr12
49127782
49131397
-
HNRNPAB
chr5
178204533
178211163
+
MRPL12
chr17
81703367
81707517
+
SNRPN
chr15
24823637
24978723
+
AL138752.2
chr9
37588413
38068687
-
NT5DC2
chr3
52524385
52535054
-
ISOC1
chr5
129094749
129114028
+
SLC25A17
chr22
40769630
40819399
-
CRMP1
chr4
5748084
5893086
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-221-3p
chrX
45746180
45746202
-
hsa-miR-423-5p
chr17
30117095
30117117
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC090948.2
chr3
16339308
16339871
+
AD000090.1
chr19
35557956
35581954
+
LINC01578
chr15
92819540
92899701
+
LINC02035
chr3
122886941
122892416
+
NEAT1
chr11
65422774
65445540
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA