Entry Detail



General Information

Database ID:exR0017294
RNA Name:ADAM17
RNA Type:mRNA
Chromosome:chr2
Starnd:-
Coordinate:
Start Site(bp):9488486End Site(bp):9556732
External Links:ENSG00000151694



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ITM2C
chr2
230864639
230879248
+
HUNK
chr21
31873020
32044633
+
TPGS2
chr18
36777647
36829216
-
MOCS3
chr20
50958818
50963929
+
ESCO2
chr8
27771949
27812640
+
COMMD1
chr2
61888724
62147247
+
TMX1
chr14
51240162
51257655
+
NACA
chr12
56712427
56731628
-
ELOVL5
chr6
53267398
53349179
-
KHDRBS1
chr1
32013868
32060850
+
PSMA2
chr7
42916861
42932185
-
PTMA
chr2
231706895
231713541
+
GATAD1
chr7
92447482
92460075
+
SLC30A9
chr4
41990502
42090461
+
SUGP2
chr19
18990888
19034023
-
CCT5
chr5
10249929
10266389
+
RNF44
chr5
176526712
176538025
-
ATP5MC3
chr2
175176258
175184607
-
G6PC3
chr17
44070735
44076344
+
ZSCAN30
chr18
35251058
35290245
-
MDN1
chr6
89642498
89819794
-
GSTP1
chr11
67583742
67586656
+
MARCKSL1
chr1
32333839
32336233
-
PSMD2
chr3
184299198
184309050
+
XPO6
chr16
28097979
28211920
-
EIF3A
chr10
119033670
119080823
-
AL136454.1
chr1
192716132
192716653
+
PIK3CA
chr3
179148114
179240093
+
COL11A2
chr6
33162681
33192499
-
ZNF24
chr18
35332227
35345482
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
BX284668.2
chr1
16870945
16883659
+
LINC01783
chr1
16533886
16536172
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA