Entry Detail



General Information

Database ID:exR0017374
RNA Name:ADIPOR2
RNA Type:mRNA
Chromosome:chr12
Starnd:+
Coordinate:
Start Site(bp):1688574End Site(bp):1788674
External Links:ENSG00000006831



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
DOCK2
chr5
169637268
170083382
+
HP1BP3
chr1
20740266
20787323
-
MMP15
chr16
58025754
58046901
+
SKA3
chr13
21153595
21176552
-
MYO5A
chr15
52307283
52529050
-
BRD4
chr19
15235519
15332545
-
DAZAP1
chr19
1407569
1435687
+
EMC6
chr17
3668812
3669668
+
DBNL
chr7
44044640
44069456
+
CAPZA2
chr7
116811070
116922049
+
VPS26C
chr21
37223420
37267919
-
TAGLN2
chr1
159918107
159925732
-
LDHA
chr11
18394560
18408425
+
HADH
chr4
107989714
108035175
+
GALNT1
chr18
35581117
35711834
+
KIF3A
chr5
132692628
132737638
-
HELLS
chr10
94501434
94613905
+
EMC10
chr19
50476400
50490870
+
RPRD1A
chr18
35984387
36067576
-
ANKRD28
chr3
15667236
15859771
-
CMTM4
chr16
66614750
66696707
-
AXIN1
chr16
287440
352723
-
C2orf42
chr2
70149880
70248615
-
HAT1
chr2
171922448
171983686
+
CDCA3
chr12
6844793
6852066
-
BMP2K
chr4
78776342
78916372
+
ANKHD1-EIF4EBP3
chr5
140401908
140549569
+
XRCC5
chr2
216107464
216206303
+
SF3B1
chr2
197388515
197435091
-
PUM2
chr2
20248691
20352234
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-150-5p
chr19
49500832
49500853
-
hsa-miR-483-3p
chr11
2134142
2134162
-
hsa-miR-1321
chrX
85835832
85835849
+
hsa-miR-4426
chr1
192716333
192716349
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005746.1
chr17
61382785
61384680
+
AL031282.2
chr1
1702736
1737688
-
AL139393.2
chr6
160926269
160943110
+
AP001496.2
chr18
5232876
5238526
-
MALAT1
chr11
65497688
65506516
+
PTPRD-AS1
chr9
8858127
8864772
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA