Entry Detail



General Information

Database ID:exR0017402
RNA Name:ADSL
RNA Type:mRNA
Chromosome:chr22
Starnd:+
Coordinate:
Start Site(bp):40346500End Site(bp):40390463
External Links:ENSG00000239900



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MADD
chr11
47269161
47330031
+
HDGFL3
chr15
83112738
83207823
-
CLTC
chr17
59619689
59696956
+
MTRNR2L10
chrX
55181392
55182442
-
HNRNPR
chr1
23303771
23344336
-
TOMM7
chr7
22812628
22822852
-
MAPK6
chr15
51952106
52067375
+
STK11
chr19
1177558
1228431
+
SAP30
chr4
173369969
173377532
+
PPIAL4F
chr1
144592868
144593652
+
SND1
chr7
127652194
128092609
+
PPP1R18
chr6
30676389
30687895
-
BAG6
chr6
31639028
31652705
-
PSMD4
chr1
151254703
151267479
+
AHCY
chr20
34280268
34311802
-
AC104452.1
chr3
49416777
49429314
-
NICN1
chr3
49422946
49429326
-
ERG28
chr14
75649791
75660876
-
SGSM3
chr22
40370591
40410289
+
PFN2
chr3
149964904
150050788
-
RPS27A
chr2
55231903
55235853
+
TPM3
chr1
154155304
154194648
-
PHF19
chr9
120855651
120894896
-
ZNF20
chr19
12092843
12140355
-
PCCA
chr13
100089015
100530437
+
GIPC1
chr19
14477760
14496149
-
EEF1A1
chr6
73515750
73523797
-
DNAJA3
chr16
4425805
4456775
+
EZR
chr6
158765741
158819368
-
SLC25A17
chr22
40769630
40819399
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-193a-5p
chr17
31560016
31560037
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL031595.3
chr22
44139365
44153626
+
AL050341.2
chr1
40256427
40257967
-
AL139819.1
chr10
100335563
100346390
-
AL353759.1
chr6
26160765
26172802
-
MIR205HG
chr1
209428817
209432838
+
NFYC-AS1
chr1
40690380
40692066
-
SNHG25
chr17
64145970
64146476
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA