Entry Detail



General Information

Database ID:exR0017414
RNA Name:AFG3L2
RNA Type:mRNA
Chromosome:chr18
Starnd:-
Coordinate:
Start Site(bp):12328944End Site(bp):12377227
External Links:ENSG00000141385



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RPS18
chr6
33272075
33276511
+
RPS23
chr5
82273320
82278396
-
SOX11
chr2
5692384
5701385
+
MT-CO2
chrMT
7586
8269
+
RPL3
chr22
39312882
39320389
-
N4BP2L2
chr13
32432417
32538885
-
CHMP5
chr9
33264879
33282070
+
PEAK1
chr15
77100656
77420144
-
PPP1CB
chr2
28751640
28802940
+
GDI2
chr10
5765223
5842132
-
PITX1
chr5
135027734
135034813
-
NUP107
chr12
68686951
68745809
+
DYNLL1
chr12
120469850
120498493
+
CAPN2
chr1
223701593
223776018
+
CSDE1
chr1
114716913
114758676
-
ALDOA
chr16
30064164
30070457
+
SLC41A1
chr1
205789094
205813748
-
TRAPPC1
chr17
7930345
7932123
-
ADH5
chr4
99070978
99088801
-
RPL35
chr9
124857880
124861981
-
LCP1
chr13
46125920
46211871
-
GAPDH
chr12
6534512
6538374
+
FLNA
chrX
154348524
154374638
-
BTG2
chr1
203305491
203309602
+
FASN
chr17
82078338
82098294
-
C17orf49
chr17
7014495
7017525
+
HK2
chr2
74834127
74893359
+
YBX1
chr1
42682418
42703805
+
THOC5
chr22
29505879
29555216
-
PTTG1IP
chr21
44849585
44873903
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC091564.7
chr11
6610883
6616594
-
AP001496.2
chr18
5232876
5238526
-
SNHG1
chr11
62851984
62855953
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA