Entry Detail



General Information

Database ID:exR0017418
RNA Name:AFTPH
RNA Type:mRNA
Chromosome:chr2
Starnd:+
Coordinate:
Start Site(bp):64524305End Site(bp):64593005
External Links:ENSG00000119844



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
BID
chr22
17734138
17774770
-
YWHAQ
chr2
9583967
9630997
-
CLEC2D
chr12
9664969
9699553
+
NAP1L1
chr12
76036585
76084958
-
DTYMK
chr2
241675747
241686944
-
TWSG1
chr18
9334767
9402420
+
TUBA1B
chr12
49127782
49131397
-
LAMC1
chr1
183023420
183145592
+
BIRC2
chr11
102347211
102378670
+
CUL3
chr2
224470150
224585397
-
PGK1
chrX
77910739
78129295
+
HLA-A
chr6
29941260
29945884
+
HEXA
chr15
72340919
72376476
-
STRN4
chr19
46719511
46746994
-
RPUSD4
chr11
126202096
126211692
-
HLA-F
chr6
29722775
29738528
+
BRPF3
chr6
36196744
36232790
+
CD48
chr1
160678746
160711831
-
ATP5MG
chr11
118401606
118431496
+
LCP1
chr13
46125920
46211871
-
ATP8B2
chr1
154325553
154351304
+
NCL
chr2
231453531
231483641
-
AKIRIN2
chr6
87674860
87702233
-
HNRNPU
chr1
244840638
244864560
-
HDAC2
chr6
113933028
114011308
-
PHF20
chr20
35771974
35950370
+
RPL32
chr3
12834485
12841582
-
MRPL4
chr19
10251901
10260055
+
RPL27
chr17
42998273
43002959
+
YWHAH
chr22
31944522
31957603
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
LINC01405
chr12
110934590
110959093
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA