Entry Detail



General Information

Database ID:exR0017419
RNA Name:AGA
RNA Type:mRNA
Chromosome:chr4
Starnd:-
Coordinate:
Start Site(bp):177430774End Site(bp):177442437
External Links:ENSG00000038002



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ANAPC4
chr4
25377213
25418498
+
ATP6V1H
chr8
53715543
53843558
-
BTF3
chr5
73498408
73505635
+
CAPN1
chr11
65180566
65212006
+
CAT
chr11
34438934
34472060
+
CCDC169
chr13
36222008
36297840
-
CCDC169-SOHLH2
chr13
36168794
36297842
-
CHD8
chr14
21385194
21456126
-
FADS2
chr11
61792980
61867354
+
FAM107B
chr10
14518557
14774897
-
MCM2
chr3
127598410
127622436
+
MRPL3
chr3
131462212
131502983
-
MTRNR2L12
chr3
96617188
96618236
-
PFN1
chr17
4945652
4949061
-
PPM1A
chr14
60245752
60299087
+
PTGES3
chr12
56663341
56688408
-
PUM3
chr9
2720469
2844095
-
RPL13A
chr19
49487554
49492308
+
RPL27A
chr11
8682788
8714759
+
RPL5
chr1
92832013
92841924
+
RPL8
chr8
144789765
144792587
-
RPS20
chr8
56067295
56074581
-
SPNS1
chr16
28974221
28984548
+
SRGN
chr10
69088103
69104805
+
TAF7
chr5
141260225
141320784
-
TMBIM6
chr12
49707725
49764934
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC109460.3
chr16
28974804
28990775
+
LOH12CR2
chr12
12355406
12357067
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA