Entry Detail



General Information

Database ID:exR0017439
RNA Name:AGO1
RNA Type:mRNA
Chromosome:chr1
Starnd:+
Coordinate:
Start Site(bp):35869808End Site(bp):35930532
External Links:ENSG00000092847



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MT-ND4L
chrMT
10470
10766
+
ESPL1
chr12
53268299
53293638
+
SAMD4B
chr19
39342396
39385710
+
CANX
chr5
179678628
179731641
+
NFATC2IP
chr16
28950807
28967097
+
LAMTOR1
chr11
72085895
72103297
-
PSMD2
chr3
184299198
184309050
+
AP1B1
chr22
29327680
29423179
-
PJA2
chr5
109334713
109409974
-
KDM4B
chr19
4969113
5153598
+
REC8
chr14
24171853
24180257
+
PTMA
chr2
231706895
231713541
+
HLA-A
chr6
29941260
29945884
+
FTO
chr16
53701692
54158512
+
KRIT1
chr7
92198969
92246166
-
DNMBP
chr10
99875577
100009947
-
AP002990.1
chr11
62559603
62591531
-
RPL36AL
chr14
49618530
49620626
-
SMS
chrX
21940709
21994837
+
SPINT2
chr19
38244035
38292615
+
KLHL36
chr16
84648511
84667686
+
PANX1
chr11
94128841
94181968
+
CALM1
chr14
90396502
90408268
+
PRPF40A
chr2
152651593
152717997
-
AGO2
chr8
140520156
140635633
-
NEURL4
chr17
7315628
7329393
-
RPL32
chr3
12834485
12841582
-
RPL8
chr8
144789765
144792587
-
LCOR
chr10
96832282
96995959
+
SND1
chr7
127652194
128092609
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC023509.1
chr12
53441741
53467528
+
AC007347.1
chr16
54033997
54054583
-
AC022034.3
chr8
53394110
53484067
-
LINC01641
chr1
227393554
227431035
+
TUG1
chr22
30969245
30979395
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA