Entry Detail



General Information

Database ID:exR0017440
RNA Name:AGO2
RNA Type:mRNA
Chromosome:chr8
Starnd:-
Coordinate:
Start Site(bp):140520156End Site(bp):140635633
External Links:ENSG00000123908



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RPL13
chr16
89560657
89566828
+
SPECC1
chr17
20009344
20319026
+
ENO1
chr1
8861000
8879190
-
EIF2AK1
chr7
6022247
6059175
-
RAB5B
chr12
55973913
55996683
+
PLXNB2
chr22
50274979
50307646
-
LENG8
chr19
54448887
54462037
+
HNRNPU
chr1
244840638
244864560
-
SMAD7
chr18
48919853
48952052
-
BRIX1
chr5
34915677
34925996
+
CD3EAP
chr19
45406209
45410766
+
PSMC3IP
chr17
42572315
42577831
-
CCDC137
chr17
81666737
81673904
+
TSPYL1
chr6
116267760
116279903
-
TIAL1
chr10
119571802
119597029
-
AGO1
chr1
35869808
35930532
+
GID8
chr20
62938147
62948475
+
ERBB2
chr17
39687914
39730426
+
TSPAN13
chr7
16753755
16784536
+
RMDN3
chr15
40735884
40755851
-
TFDP1
chr13
113584721
113641473
+
PLXNA1
chr3
126988594
127037392
+
PDLIM1
chr10
95237572
95291012
-
MCC
chr5
113022099
113488823
-
RANBP9
chr6
13621498
13711835
-
NPC1
chr18
23506184
23586506
-
ILF3
chr19
10654261
10692417
+
APRT
chr16
88809339
88811937
-
SMARCD2
chr17
63832081
63843065
-
TCF4
chr18
55222185
55664787
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC068831.7
chr15
91022766
91023200
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA