Entry Detail



General Information

Database ID:exR0017442
RNA Name:AGO4
RNA Type:mRNA
Chromosome:chr1
Starnd:+
Coordinate:
Start Site(bp):35808016End Site(bp):35857890
External Links:ENSG00000134698



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ADAM19
chr5
157395534
157575775
-
MT1G
chr16
56666731
56668065
-
POLD2
chr7
44114681
44124358
-
UBXN6
chr19
4444999
4457794
-
RPLP2
chr11
809965
812880
+
TATDN2
chr3
10248023
10281218
+
PTGES2
chr9
128120693
128128462
-
VAMP3
chr1
7771296
7781432
+
CBFA2T2
chr20
33490075
33650036
+
TMEM132A
chr11
60924463
60937159
+
MT-CO3
chrMT
9207
9990
+
TRIM73
chr7
75395063
75410996
+
SFPQ
chr1
35176378
35193145
-
PMEL
chr12
55954105
55973317
-
RPL37
chr5
40825262
40835222
-
GATA2
chr3
128479427
128493201
-
PTMA
chr2
231706895
231713541
+
SRGN
chr10
69088103
69104805
+
YBX1
chr1
42682418
42703805
+
SLC38A2
chr12
46358188
46372773
-
HNRNPF
chr10
43385617
43409166
-
ANKH
chr5
14704800
14871778
-
AGO3
chr1
35930718
36072500
+
OSBPL8
chr12
76351797
76559809
-
DDX5
chr17
64498254
64508199
-
SDF4
chr1
1216908
1232067
-
XPO1
chr2
61477849
61538626
-
LGMN
chr14
92703807
92748679
-
ARL8B
chr3
5122245
5180912
+
GGCT
chr7
30496621
30504841
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC124944.3
chr3
195900986
195903417
+
NEAT1
chr11
65422774
65445540
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA