Entry Detail



General Information

Database ID:exR0017444
RNA Name:AGPAT2
RNA Type:mRNA
Chromosome:chr9
Starnd:-
Coordinate:
Start Site(bp):136673143End Site(bp):136687457
External Links:ENSG00000169692



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCA7
chr19
1039997
1065572
+
ARF1
chr1
228082660
228099212
+
CSNK1E
chr22
38290691
38318084
-
DNAJB6
chr7
157335381
157417439
+
ENO1
chr1
8861000
8879190
-
EP300
chr22
41092592
41180077
+
EZR
chr6
158765741
158819368
-
FTL
chr19
48965309
48966879
+
GEMIN5
chr5
154887411
154938211
-
ILF3
chr19
10654261
10692417
+
ITM2C
chr2
230864639
230879248
+
MTA1
chr14
105419820
105470729
+
MYD88
chr3
38138478
38143022
+
NELFE
chr6
31952087
31959038
-
NKX3-2
chr4
13540830
13544508
-
PLXNA3
chrX
154458281
154477779
+
POLD1
chr19
50384204
50418018
+
QPRT
chr16
29663279
29698699
+
RPL13A
chr19
49487554
49492308
+
RPS15
chr19
1438358
1440494
+
SRSF4
chr1
29147743
29181900
-
TNK2
chr3
195863364
195911945
-
TRAPPC12
chr2
3379675
3485094
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC019205.1
chr6
73263212
73301789
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA