Entry Detail



General Information

Database ID:exR0017447
RNA Name:AGPAT5
RNA Type:mRNA
Chromosome:chr8
Starnd:+
Coordinate:
Start Site(bp):6708642End Site(bp):6761503
External Links:ENSG00000155189



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MFSD14B
chr9
94374569
94461042
+
RPL18A
chr19
17859910
17864153
+
NCL
chr2
231453531
231483641
-
PFN1
chr17
4945652
4949061
-
GNA12
chr7
2728105
2844308
-
RPL14
chr3
40457292
40468587
+
MMP24OS
chr20
35201745
35278131
-
Z82206.1
chr22
39960397
39964718
+
PRKAB1
chr12
119667864
119681624
+
TMEM129
chr4
1715952
1721358
-
PIGL
chr17
16217191
16351797
+
ARAP1
chr11
72685069
72793599
-
MRPL30
chr2
99181152
99199561
+
ELP3
chr8
28089673
28191156
+
AC010422.3
chr19
12643831
12648397
-
EEF1G
chr11
62559596
62574086
-
SLC9A3
chr5
470456
524449
-
EIF2A
chr3
150546678
150586016
+
ARL6IP1
chr16
18791669
18801572
-
TMEM241
chr18
23197144
23437961
-
PKIG
chr20
44531785
44624247
+
ATF2
chr2
175072250
175168382
-
LENG8
chr19
54448887
54462037
+
TMEM248
chr7
66921225
66958551
+
FKBP4
chr12
2794970
2805423
+
TPT1
chr13
45333471
45341370
-
ELL
chr19
18442663
18522116
-
DPY19L1
chr7
34928876
35038271
-
CRYL1
chr13
20403666
20525873
-
RACK1
chr5
181236897
181248096
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010442.1
chr5
466124
473098
-
AC104461.1
chr1
200333193
200478669
+
AL022311.1
chr22
37876148
37895563
+
AC116565.1
chr4
577168
618076
+
ESRG
chr3
54632122
54639857
-
MALAT1
chr11
65497688
65506516
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA