Entry Detail



General Information

Database ID:exR0017494
RNA Name:AK6
RNA Type:mRNA
Chromosome:chr5
Starnd:-
Coordinate:
Start Site(bp):69350984End Site(bp):69370013
External Links:ENSG00000085231



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AL513165.2
chr9
37512547
37592469
-
BICC1
chr10
58512872
58831435
+
FBXO10
chr9
37510892
37576380
-
FOXP4
chr6
41546426
41602384
+
GLRX3
chr10
130136391
130184521
+
KPNA1
chr3
122421902
122514945
-
LTV1
chr6
143843338
143863812
+
NFS1
chr20
35668052
35699355
-
PPP2R1B
chr11
111726908
111766389
-
RAB12
chr18
8609437
8639382
+
RAB1A
chr2
65070696
65130331
-
RANBP9
chr6
13621498
13711835
-
RBMX
chrX
136848004
136880764
-
SNRPD2
chr19
45687454
45692569
-
TAF9
chr5
69364743
69370013
-
TJP1
chr15
29699367
29968865
-
USP1
chr1
62436297
62451804
+
WDFY4
chr10
48684876
48982956
+
WDR7
chr18
56651343
57036606
+
ZFAND5
chr9
72351413
72365235
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AD000090.1
chr19
35557956
35581954
+
AL138689.2
chr13
106491147
106521630
+
IQCH-AS1
chr15
67290636
67521844
-
SNHG3
chr1
28505980
28510892
+
WDR7-OT1
chr18
57027832
57038845
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA