Entry Detail



General Information

Database ID:exR0017512
RNA Name:AKAP9
RNA Type:mRNA
Chromosome:chr7
Starnd:+
Coordinate:
Start Site(bp):91940867End Site(bp):92110673
External Links:ENSG00000127914



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CCDC85C
chr14
99500190
99604207
-
SFRP1
chr8
41261962
41309473
-
YWHAE
chr17
1344275
1400222
-
RBBP6
chr16
24537693
24572863
+
SMARCC1
chr3
47585269
47782106
-
PABPC1
chr8
100685816
100722809
-
C2orf68
chr2
85605254
85612066
-
FKBP4
chr12
2794970
2805423
+
KDM5C
chrX
53191321
53225422
-
RHOA
chr3
49359145
49412998
-
U2AF1
chr21
43092956
43107587
-
PIGQ
chr16
566995
584136
+
ALDOA
chr16
30064164
30070457
+
UBE2C
chr20
45812576
45816957
+
ZDHHC9
chrX
129803288
129843909
-
TPT1
chr13
45333471
45341370
-
CNPY3
chr6
42929192
42939294
+
OXA1L
chr14
22766522
22773042
+
HMGA2
chr12
65824131
65966295
+
UQCC2
chr6
33694293
33711727
-
KMT2B
chr19
35717973
35738878
+
MRPL42
chr12
93467488
93516214
+
RPS13
chr11
17074388
17077715
-
SALL3
chr18
78980275
79002677
+
AUP1
chr2
74526645
74529760
-
ILF2
chr1
153661788
153671028
-
CBX3
chr7
26201162
26213607
+
TUBB
chr6
30720352
30725426
+
C12orf10
chr12
53299695
53307177
+
MEX3D
chr19
1554669
1568058
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
Z98883.1
chr16
568837
576257
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA