Entry Detail



General Information

Database ID:exR0017513
RNA Name:AKIP1
RNA Type:mRNA
Chromosome:chr11
Starnd:+
Coordinate:
Start Site(bp):8911139End Site(bp):8920084
External Links:ENSG00000166452



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CBX3
chr7
26201162
26213607
+
FSCN1
chr7
5592816
5606655
+
MDM2
chr12
68808177
68850686
+
OAS3
chr12
112938444
112973251
+
COPS7B
chr2
231781671
231809254
+
EIF1
chr17
41688885
41692668
+
MRPL49
chr11
65122183
65127371
+
SLC2A1
chr1
42925375
42958868
-
B2M
chr15
44711487
44718877
+
NIPSNAP1
chr22
29554808
29581327
-
AK4
chr1
65147549
65232145
+
SLC25A6
chrX
1386152
1392113
-
DHX15
chr4
24517441
24584554
-
VLDLR
chr9
2621787
2660056
+
AL136454.1
chr1
192716132
192716653
+
TXNL1
chr18
56597209
56651600
-
CHKB-CPT1B
chr22
50568869
50582965
-
KRT7
chr12
52232520
52252186
+
TAGLN2
chr1
159918107
159925732
-
CHMP1A
chr16
89644435
89657721
-
FP565260.6
chr21
5155499
5165472
-
FP565260.2
chr21
5116343
5133805
-
OST4
chr2
27070472
27071654
-
TSTD2
chr9
97600080
97633368
-
PSMA5
chr1
109399042
109426448
-
PPP2R1A
chr19
52190048
52229518
+
IL21R
chr16
27402174
27452042
+
THOC5
chr22
29505879
29555216
-
GPSM3
chr6
32190766
32195523
-
MAT2A
chr2
85539168
85545281
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-4426
chr1
192716333
192716349
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
DANCR
chr4
52712404
52720351
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA