Entry Detail



General Information

Database ID:exR0017535
RNA Name:ALAS1
RNA Type:mRNA
Chromosome:chr3
Starnd:+
Coordinate:
Start Site(bp):52198086End Site(bp):52214327
External Links:ENSG00000023330



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RAB28
chr4
13361354
13484365
-
SUPT6H
chr17
28662198
28702679
+
ENTPD1
chr10
95711779
95877266
+
SELENOH
chr11
57741250
57743554
+
RBM15B
chr3
51391285
51397908
+
AGO4
chr1
35808016
35857890
+
STIP1
chr11
64185272
64204543
+
RAB11B
chr19
8389981
8404434
+
RBP1
chr3
139517434
139539829
-
ATP5MG
chr11
118401606
118431496
+
RPS29
chr14
49570984
49599164
-
MRPL4
chr19
10251901
10260055
+
AP2S1
chr19
46838136
46850992
-
RPL7
chr8
73290242
73295789
-
RPL23
chr17
38847860
38853764
-
NR3C1
chr5
143277931
143435512
-
ABLIM1
chr10
114431113
114768061
-
ENO1
chr1
8861000
8879190
-
RPL37A
chr2
216498825
216579180
+
RAB1A
chr2
65070696
65130331
-
MGST1
chr12
16347142
16609259
+
CBX1
chr17
48070052
48101478
-
MYL6
chr12
56158161
56163496
+
HNRNPA0
chr5
137745651
137754363
-
ZNF207
chr17
32350117
32381886
+
PPFIBP2
chr11
7513298
7657127
+
KLHL23
chr2
169694488
169776989
+
PARVB
chr22
43999211
44172949
+
ARHGEF11
chr1
156934840
157045370
-
NDFIP2
chr13
79481124
79556075
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA