Entry Detail



General Information

Database ID:exR0017540
RNA Name:ALDH18A1
RNA Type:mRNA
Chromosome:chr10
Starnd:-
Coordinate:
Start Site(bp):95605941End Site(bp):95656711
External Links:ENSG00000059573



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
GTF3C2
chr2
27325849
27357034
-
MCM7
chr7
100092728
100101940
-
GABARAP
chr17
7240008
7242449
-
PTPRS
chr19
5158495
5340803
-
OPTN
chr10
13099449
13138308
+
HOXD3
chr2
176136612
176173102
+
ELL2
chr5
95885098
95961851
-
MTA2
chr11
62593214
62601865
-
HNRNPC
chr14
21209136
21269494
-
CCNF
chr16
2429394
2458854
+
PGAM1
chr10
97426191
97433444
+
HMGXB3
chr5
150000046
150053142
+
ARPC1B
chr7
99374249
99394816
+
HSPA5
chr9
125234853
125241343
-
CSDE1
chr1
114716913
114758676
-
MTG1
chr10
133394094
133422520
+
SRM
chr1
11054584
11060020
-
AKAP13
chr15
85380571
85749358
+
MRFAP1
chr4
6640091
6642745
+
E2F4
chr16
67192155
67198918
+
EEF2KMT
chr16
5084284
5097795
-
SCAMP2
chr15
74843730
74873365
-
LASP1
chr17
38869859
38921770
+
AHCY
chr20
34280268
34311802
-
ACAT2
chr6
159762045
159779112
+
TNC
chr9
115019575
115118257
-
CAMTA2
chr17
4967992
4987675
-
CIAO1
chr2
96266159
96274173
+
DDX24
chr14
94048287
94081212
-
SRRM2
chr16
2752626
2772538
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC010319.3
chr19
17419305
17419774
-
AC016876.2
chr17
7581964
7584086
-
AL031595.3
chr22
44139365
44153626
+
FOXD2-AS1
chr1
47432133
47434641
-
LINC00667
chr18
5237826
5290608
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA