exRNAdisease

Entry Detail

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General Information

Database ID: exR0017895 RNA Name: ARF1 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 228082660 End Site(bp): 228099212 External Links: ENSG00000143761

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.6 chr12 6556886 6607367 - AC011455.2 chr19 38915404 38949855 - AC073610.2 chr12 48903503 48957365 - ACADVL chr17 7217125 7225266 + ACTA1 chr1 229431245 229434098 - ACTB chr7 5527148 5563784 - ACTN4 chr19 38647649 38731589 + ACTR10 chr14 58200080 58235636 + ACTR2 chr2 65227753 65271253 + ADGRA2 chr8 37784191 37844896 + AFDN chr6 167826922 167972023 + AGO4 chr1 35808016 35857890 + AGPAT2 chr9 136673143 136687457 - AGPAT3 chr21 43865223 43987592 + AIMP2 chr7 6009255 6023834 + AKAP8L chr19 15380050 15419141 - AKAP9 chr7 91940867 92110673 + AL713999.1 chr1 155169409 155187272 - ALDH5A1 chr6 24494867 24537207 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3610 chr8 116874740 116874759 - hsa-miR-3620-3p chr1 228097320 228097341 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC026362.1 chr12 122975320 122982907 + AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA