exRNAdisease

Entry Detail

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General Information

Database ID: exR0017896 RNA Name: ARF3 RNA Type: mRNA Chromosome: chr12 Starnd: - Coordinate: Start Site(bp): 48935723 End Site(bp): 48957487 External Links: ENSG00000134287

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004223.3 chr17 35011349 35121493 - AC005258.1 chr19 2269525 2341172 + AC010422.3 chr19 12643831 12648397 - AC073610.2 chr12 48903503 48957365 - AC104109.3 chr5 134167170 134226071 - ACAA1 chr3 38103129 38137242 - ACBD6 chr1 180269653 180502954 - ACTB chr7 5527148 5563784 - AGBL5 chr2 27042364 27070622 + AGK chr7 141551278 141655244 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-660-5p chrX 50013256 50013277 + hsa-miR-140-3p chr16 69933142 69933162 + hsa-miR-362-3p chrX 50009005 50009026 + hsa-miR-1224-5p chr3 184241405 184241423 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002116.1 chr19 36008638 36014235 - AC026362.1 chr12 122975320 122982907 + AC104461.1 chr1 200333193 200478669 + AL049795.2 chr1 32170733 32176568 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA