exRNAdisease

Entry Detail

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General Information

Database ID: exR0017944 RNA Name: ARHGDIA RNA Type: mRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 81867721 End Site(bp): 81871378 External Links: ENSG00000141522

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABI2 chr2 203328239 203447728 + AC010132.3 chr7 42909273 42932174 - AC011005.1 chr7 129126518 129130793 + AC018512.1 chr15 43772617 43799133 - AC020909.1 chr19 50415799 50428409 + AC093525.2 chr16 2496032 2520218 + AC120057.2 chr17 7240427 7244635 - ACBD6 chr1 180269653 180502954 - ACER3 chr11 76860867 77026797 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAR chr1 154582057 154628013 - ADORA2A chr22 24417879 24442357 + AGRN chr1 1020120 1056118 + AKT1 chr14 104769349 104795751 - AKT1S1 chr19 49869033 49878459 - ALAD chr9 113386312 113401290 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-16-5p chr3 160404754 160404775 + hsa-miR-339-5p chr7 1022990 1023012 - hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-588 chr6 126484646 126484666 + hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-541-3p chr14 101064548 101064569 + hsa-miR-744-5p chr17 12081909 12081930 + hsa-miR-1321 chrX 85835832 85835849 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007218.1 chr16 9666885 9676843 - AC060780.1 chr17 43148368 43171037 - AC099329.1 chr3 42785087 42852428 - AC109460.3 chr16 28974804 28990775 + AC124068.2 chr15 89335053 89336161 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA