Entry Detail



General Information

Database ID:exR0018554
RNA Name:BRD2
RNA Type:mRNA
Chromosome:chr6
Starnd:+
Coordinate:
Start Site(bp):32968594End Site(bp):32981505
External Links:ENSG00000204256



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD15
chr17
29560547
29567037
-
ABHD2
chr15
89087459
89202355
+
ABL1
chr9
130713016
130887675
+
AC006030.1
chr2
74211604
74363377
-
AC073612.1
chr12
71674204
71698968
+
AC092143.1
chr16
89919165
89936092
+
AC098850.3
chr17
16690261
16804453
+
AC104532.1
chr19
5904841
5914707
+
AKIRIN2
chr6
87674860
87702233
-
AL162417.1
chr9
133098121
133163914
-
AL358113.1
chr9
69035747
69255187
+
ALDH5A1
chr6
24494867
24537207
+
ALDH6A1
chr14
74056847
74084492
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC021078.1
chr5
149494314
149504670
-
AC105339.2
chr15
82752884
82757208
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA