exRNAdisease

Entry Detail

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General Information

Database ID: exR0018579 RNA Name: BRWD1 RNA Type: mRNA Chromosome: chr21 Starnd: - Coordinate: Start Site(bp): 39184176 End Site(bp): 39321559 External Links: ENSG00000185658

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCB10 chr1 229516582 229558707 - AC008982.1 chr19 38817471 38840178 - AC010422.3 chr19 12643831 12648397 - AC026954.2 chr17 7312661 7319174 - AC068946.2 chr2 219209772 219222738 - AC104452.1 chr3 49416777 49429314 - ADCY9 chr16 3953387 4116442 - ADGRG6 chr6 142301854 142446266 + ADORA2A chr22 24417879 24442357 + ADPRHL2 chr1 36088892 36093932 + AGAP3 chr7 151085831 151144436 + AGO2 chr8 140520156 140635633 - AL136295.1 chr14 24189157 24213473 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-19a-3p chr13 91350939 91350961 + hsa-miR-23b-3p chr9 95085265 95085287 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012146.1 chr17 5111468 5115004 + AC016876.2 chr17 7581964 7584086 - AC018521.1 chr17 47945424 47981736 + AC067930.1 chr8 143579636 143580670 + AD000090.1 chr19 35557956 35581954 + AL096870.2 chr14 24209646 24215987 - Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA