Entry Detail



General Information

Database ID:exR0018626
RNA Name:BUB3
RNA Type:mRNA
Chromosome:chr10
Starnd:+
Coordinate:
Start Site(bp):123154402End Site(bp):123170467
External Links:ENSG00000154473



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABCA3
chr16
2275881
2340746
-
ABCC5
chr3
183919934
184017939
-
ABI2
chr2
203328239
203447728
+
AC010422.3
chr19
12643831
12648397
-
ACADSB
chr10
123008979
123058290
+
ACTB
chr7
5527148
5563784
-
ACTR2
chr2
65227753
65271253
+
ADSL
chr22
40346500
40390463
+
AGAP3
chr7
151085831
151144436
+
AK4
chr1
65147549
65232145
+
AKNA
chr9
114334156
114394405
-
AL022238.4
chr22
40346529
40410054
+
AL121594.1
chr14
35122549
35317474
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AC023509.1
chr12
53441741
53467528
+
AD000090.1
chr19
35557956
35581954
+
AF117829.1
chr8
89585872
89757812
-
AL031779.1
chr6
56331788
56332117
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA