exRNAdisease

Entry Detail

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General Information

Database ID: exR0019010 RNA Name: CALM3 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 46601074 End Site(bp): 46610782 External Links: ENSG00000160014

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ALDH6A1 chr14 74056847 74084492 - ADAMTSL4 chr1 150549369 150560937 + ABHD12 chr20 25294742 25390835 - AGPAT1 chr6 32168212 32178096 - ACOT13 chr6 24667035 24705065 + AHCY chr20 34280268 34311802 - AGO1 chr1 35869808 35930532 + ALDH7A1 chr5 126531200 126595362 - AAMDC chr11 77821109 77918432 + ADAR chr1 154582057 154628013 - AHSA1 chr14 77457870 77469472 + AC006486.1 chr19 42234583 42255132 - AC010422.3 chr19 12643831 12648397 - ABI2 chr2 203328239 203447728 + AL121594.1 chr14 35122549 35317474 + ALDH18A1 chr10 95605941 95656711 - AC099811.2 chr17 42119674 42154916 - ABCC5 chr3 183919934 184017939 - ACTG1 chr17 81509971 81523847 - AIF1L chr9 131096476 131123152 + AC245033.1 chr15 82536788 82573194 - ACACA chr17 37084992 37406836 - ADAM19 chr5 157395534 157575775 - ABTB1 chr3 127672935 127680926 + ACTB chr7 5527148 5563784 - ACIN1 chr14 23058564 23095614 - AGAP1 chr2 235494043 236131800 + AC009133.6 chr16 29812261 29820092 + AARSD1 chr17 42950526 42964498 - AC090360.1 chr18 80034346 80097088 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-34a-5p chr1 9151735 9151756 - hsa-miR-205-5p chr1 209432166 209432187 + hsa-miR-449a chr5 55170586 55170607 - hsa-miR-449b-5p chr5 55170706 55170727 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC026362.1 chr12 122975320 122982907 + AC079781.5 chr7 97851688 97972985 - AC093503.2 chr19 46609277 46610779 - AC125807.2 chr12 3041437 3044950 + AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA