Entry Detail



General Information

Database ID:exR0019144
RNA Name:CBX3
RNA Type:mRNA
Chromosome:chr7
Starnd:+
Coordinate:
Start Site(bp):26201162End Site(bp):26213607
External Links:ENSG00000122565



Disease Information

Disease Name:Trisomy 18 Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D000073842
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome



Expression Detail

GEO ID:GSE25634
Description:Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls
Experimental Design:Disease vs Control
Case Disease Type:Trisomy 18 Syndrome
Case Disease SubType:NA
Case Sample:Trisomy 18 Syndrome
Control Sample:Normal
Number of Case:5
Number of Control:6
Number of Samples:11





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD17C
chr15
80679684
80755621
+
AC004922.1
chr7
99325879
99394653
+
AC012254.2
chr18
47108188
47176345
-
AC068547.1
chr2
151802651
151973949
-
ACAD10
chr12
111686056
111757107
+
ACTB
chr7
5527148
5563784
-
AD000671.2
chr19
35739252
35745432
-
ADAR
chr1
154582057
154628013
-
ADCY1
chr7
45574140
45723116
+
ADGRG2
chrX
18989307
19122637
-
ADGRL2
chr1
81306160
81992436
+
ADM
chr11
10305073
10307397
+
ADSL
chr22
40346500
40390463
+
AK4
chr1
65147549
65232145
+
AKAP1
chr17
57085092
57121346
+
AKAP9
chr7
91940867
92110673
+
AKIP1
chr11
8911139
8920084
+
AL021546.1
chr12
120438198
120460006
+
AL022238.4
chr22
40346529
40410054
+
AL139300.1
chr14
103562962
103685924
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-629-5p
chr15
70079427
70079447
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC011476.3
chr19
55006193
55048086
+
AC016876.2
chr17
7581964
7584086
-
Display:



Experiment Detail

GEO ID:GSE25634
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:NA
RNA Extract protocol:RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform.
RNA library preparation protocol:biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA