exRNAdisease

Entry Detail

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General Information

Database ID: exR0019365 RNA Name: CCT2 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 69585426 End Site(bp): 69601570 External Links: ENSG00000166226

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AACS chr12 125065434 125143333 + ABI2 chr2 203328239 203447728 + AC104452.1 chr3 49416777 49429314 - AC120057.2 chr17 7240427 7244635 - AC124312.1 chr15 24955034 25000276 + AC138811.2 chr16 18788063 18801519 - ACER3 chr11 76860867 77026797 + ACIN1 chr14 23058564 23095614 - ACLY chr17 41866917 41930542 - ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - ADNP chr20 50888916 50931437 - AGGF1 chr5 77029251 77065234 + AKIRIN1 chr1 38991276 39006059 + AL049629.2 chr11 33698261 33722467 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1244 chr2 231713368 231713393 + hsa-miR-3609 chr7 98881700 98881723 + hsa-miR-3654 chr7 133034860 133034878 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC005899.4 chr17 32328441 32329395 + AD000090.1 chr19 35557956 35581954 + AL049543.1 chr6 28587378 28591747 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA