exRNAdisease

Entry Detail

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General Information

Database ID: exR0019371 RNA Name: CCT7 RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 73233420 End Site(bp): 73253021 External Links: ENSG00000135624

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand A1BG chr19 58345178 58353492 - ABHD16A chr6 31686955 31703356 - AC004832.3 chr22 30409255 30428990 + AC010422.3 chr19 12643831 12648397 - AC010463.1 chr19 17267418 17282966 + AC011511.4 chr19 10315471 10320678 - AC091167.2 chr15 90249556 90272208 + AC092143.1 chr16 89919165 89936092 + ACIN1 chr14 23058564 23095614 - ACO1 chr9 32384603 32454769 + ACOT7 chr1 6264269 6394391 - ACTA2 chr10 88935074 88991339 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ADA2 chr22 17178790 17258235 - ADAMTS7 chr15 78759206 78811464 - ADGRL1 chr19 14147743 14206187 - ADI1 chr2 3497366 3519531 - ADNP chr20 50888916 50931437 - AFMID chr17 78187317 78207701 + AGTRAP chr1 11736084 11754802 + AHCY chr20 34280268 34311802 - AIF1 chr6 31615217 31617021 + AIF1L chr9 131096476 131123152 + AL136454.1 chr1 192716132 192716653 + ALDH7A1 chr5 126531200 126595362 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3654 chr7 133034860 133034878 - hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012313.3 chr19 58346854 58362751 - AC093904.4 chr2 9106593 9109865 + AC133644.3 chr2 87455476 87767359 + AC245014.3 chr1 145281116 145281462 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA