exRNAdisease

Entry Detail

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General Information

Database ID: exR0019433 RNA Name: CD52 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 26317958 End Site(bp): 26320523 External Links: ENSG00000169442

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + AC009690.1 chr15 72284727 72375981 - AC099811.2 chr17 42119674 42154916 - ACAD11 chr3 132558138 132660082 - ACADS chr12 120725774 120740008 + ACLY chr17 41866917 41930542 - ACO2 chr22 41469117 41528989 + ACTG1 chr17 81509971 81523847 - ACTR1B chr2 97655939 97664044 - ACTR6 chr12 100199122 100241865 + AGPAT3 chr21 43865223 43987592 + AK4 chr1 65147549 65232145 + AKR1A1 chr1 45550543 45570049 + AL136454.1 chr1 192716132 192716653 + AL669918.1 chr6 32813767 32838822 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-4426 chr1 192716333 192716349 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010327.5 chr19 55216660 55221616 + AC026362.1 chr12 122975320 122982907 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA