exRNAdisease

Entry Detail

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General Information

Database ID: exR0019446 RNA Name: CD74 RNA Type: mRNA Chromosome: chr5 Starnd: - Coordinate: Start Site(bp): 150400041 End Site(bp): 150412929 External Links: ENSG00000019582

Disease Information

Disease Name: Trisomy 18 Syndrome Disease Category: Congenital, Hereditary, and Neonatal Diseases and Abnormalities MeSH ID: D000073842 Type: Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities Alias: Trisomy 18 Syndromes//Trisomy E Syndrome//Complete Trisomy 18 Syndrome//Edwards Syndrome//Trisomy 18//Mosaic Trisomy 18 Syndrome

Expression Detail

GEO ID: GSE25634 Description: Expression profiles of amniotic fluid from human fetuses with Trisomy 18 and euploid controls Experimental Design: Disease vs Control Case Disease Type: Trisomy 18 Syndrome Case Disease SubType: NA Case Sample: Trisomy 18 Syndrome Control Sample: Normal Number of Case: 5 Number of Control: 6 Number of Samples: 11

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AKT1 chr14 104769349 104795751 - A4GALT chr22 42692121 42721298 - ACTN4 chr19 38647649 38731589 + AHCY chr20 34280268 34311802 - ACTG1 chr17 81509971 81523847 - AATF chr17 36948954 37056871 + AC006064.6 chr12 6556886 6607367 - AC005258.1 chr19 2269525 2341172 + AHCYL1 chr1 109984765 110023742 + AC023055.1 chr12 55757275 55827546 - AKAP8 chr19 15353385 15379798 - ALDOA chr16 30064164 30070457 + ACTR3 chr2 113890063 113962596 + ACTR2 chr2 65227753 65271253 + AL049629.2 chr11 33698261 33722467 - ACOT9 chrX 23701055 23766475 - AK3 chr9 4709556 4742043 - ACAP1 chr17 7336529 7351477 + AC008982.1 chr19 38817471 38840178 - ADGRE1 chr19 6887566 6940459 + AL669918.1 chr6 32813767 32838822 - AC007192.1 chr19 18153158 18178117 + ACTB chr7 5527148 5563784 - AL590764.2 chrX 71103987 71111575 - AKR1B1 chr7 134442356 134459284 - ALDH18A1 chr10 95605941 95656711 - AC005670.2 chr17 46923133 47049932 + AIP chr11 67483026 67491103 + AKR7A2 chr1 19303965 19312146 - ACIN1 chr14 23058564 23095614 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-24-3p chr9 95086064 95086085 + hsa-miR-7-5p chr19 4770700 4770723 + hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-4687-3p chr11 3856113 3856133 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC007952.4 chr17 19112000 19112636 - AC016876.2 chr17 7581964 7584086 - AC020663.1 chr16 4730115 4752565 - AL137802.2 chr1 16514645 16515754 + Display:

Experiment Detail

GEO ID: GSE25634 Sample Source: Amniotic Fluid Source Fraction: Supernatant Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: RNA was extracted from 10 mL amniotic fluid supernatant with 30 mL TRIzol LS Reagent (Invitrogen, Carlsbad, CA) and 8 mL chloroform. RNA library preparation protocol: biotin Samples were labeled using the FL-Ovation™ cDNA Biotin Module V2 (NuGEN, San Carlos, CA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA